Bioconductor Genome

Showing : genome • reset

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2.7k

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txdb genome exons

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Bogdan ▴ 670

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672

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build genome

14 months ago Dmitry • 0

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1.9k

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annotation gff3 gff genome

updated 4.7 years ago by Michael Lawrence ★ 11k • written 4.7 years ago by mictadlo ▴ 10

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1.3k

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r build genome chicken-sheme

8.6 years ago pertille • 0

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1.0k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by jam526 • 0

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1.1k

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Gviz R UCSC Tracks genome locusplot

updated 4.6 years ago by Robert Ivanek ▴ 730 • written 4.6 years ago by s.koturan • 0

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893

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genome novel package release

updated 5.3 years ago by James W. MacDonald 66k • written 5.3 years ago by pertille • 0

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935

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single cell bioinformatics genome sequencing Job

4.7 years ago jmaanaki • 0

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861

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single cell genome cancer Job

5.0 years ago jmaanaki • 0

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1.1k

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Genome GWASdata

3.3 years ago Jocelyn • 0

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1.3k

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Genome readVcf VariantAnnotation

3.2 years ago naive • 0

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2.0k

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Genome bwamem ChIPSeqData index

updated 15 months ago by ATpoint ★ 4.2k • written 15 months ago by Maka • 0

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1.0k

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Alignment Genome

2.6 years ago Charles Plessy ▴ 180

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1.2k

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multiplealignment genome

5.7 years ago Giuseppe ▴ 20

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198

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ensembldb transcriptome genome coordinateconversion

updated 7 weeks ago by Michael Love 42k • written 7 weeks ago by saadmurtazakhan ▴ 10

15 results • Page 1 of 1

Recent ...

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Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by Wei Shi ★ 3.6k

Your bam file names should be stored in a vector and then provided to the `files` parameter.

Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k

Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…

Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

I was talking about the command line version.

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …

Votes

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Answer: Documenting resources in an `ExperimentHub` package?

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

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