Bioconductor Genome

Showing : genome • reset

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171

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ensembldb transcriptome genome coordinateconversion

updated 4 weeks ago by Michael Love 41k • written 5 weeks ago by saadmurtazakhan ▴ 10

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657

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build genome

14 months ago • updated 13 months ago Dmitry • 0

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1.9k

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Genome bwamem ChIPSeqData index

updated 14 months ago by ATpoint ★ 4.1k • written 14 months ago by Maka • 0

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1.0k

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Alignment Genome

2.6 years ago • updated 2.5 years ago Charles Plessy ▴ 180

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1.3k

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Genome readVcf VariantAnnotation

3.1 years ago naive • 0

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1.1k

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Genome GWASdata

3.2 years ago Jocelyn • 0

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999

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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1.1k

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Gviz R UCSC Tracks genome locusplot

updated 4.5 years ago by Robert Ivanek ▴ 730 • written 4.5 years ago by s.koturan • 0

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919

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single cell bioinformatics genome sequencing Job

4.6 years ago jmaanaki • 0

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1.9k

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annotation gff3 gff genome

updated 4.7 years ago by Michael Lawrence ★ 11k • written 4.7 years ago by mictadlo ▴ 10

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2.7k

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txdb genome exons

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Bogdan ▴ 670

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852

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single cell genome cancer Job

4.9 years ago jmaanaki • 0

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885

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genome novel package release

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by pertille • 0

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1.2k

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multiplealignment genome

5.6 years ago Giuseppe ▴ 20

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1.2k

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r build genome chicken-sheme

8.5 years ago pertille • 0

15 results • Page 1 of 1

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k