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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 21.7 years ago by ▴ 30
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3
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1.8k
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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 21.7 years ago by ▴ 50
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1
reply
1.6k
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An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 21.7 years ago by ▴ 810
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2.0k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
9.0 years ago • updated 8.8 years ago Yuan Tian ▴ 90
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3.2k
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CanceR: Survival plots
cancer gui survival Kaplan-Meier
10.6 years ago • updated 10.5 years ago kmezhoud ▴ 10
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1.7k
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CRSIPRseek: no summary file generated
GUI GUI
updated 10.5 years ago by ▴ 40 • written 11.2 years ago by ★ 4.3k
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3
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Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 11.4 years ago by ★ 8.2k • written 11.4 years ago by ▴ 80
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1
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1.3k
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Error in isVersioned(object)
GUI GUI
updated 11.5 years ago by 25k • written 11.5 years ago by ★ 13k
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8
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4.1k
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Error installing development version of DESeq2
GUI DESeq2 GUI DESeq2
updated 11.8 years ago by ★ 8.2k • written 11.8 years ago by ▴ 220
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1
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1.8k
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limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
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2.1k
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How to compare GO term lists and create matching network?
GO Network GUI Organism GO Network GUI Organism
updated 12.0 years ago by ▴ 750 • written 12.0 years ago by ▴ 160
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1.8k
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Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 3.0k
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1.0k
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI BSgenome BSgenome GUI BSgenome BSgenome
12.7 years ago Dan Tenenbaum ★ 8.2k
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7
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1.9k
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI GUI
updated 12.7 years ago by ★ 8.2k • written 12.7 years ago by ★ 13k
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3
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2.4k
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Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 2.0k
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3
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2.3k
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Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 13.0 years ago by 21k • written 13.0 years ago by ★ 2.0k
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sizepower
qPCR GUI qPCR GUI
13.1 years ago Michael Salbaum ▴ 80
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1
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2.3k
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ChipPeakAnno / GRanges isolate peaks that do NOT overlap
GO GUI BSgenome BSgenome GO GUI BSgenome BSgenome
updated 13.2 years ago by ★ 4.3k • written 13.2 years ago by ▴ 110
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4
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2.9k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
13.2 years ago Dan Tenenbaum ★ 8.2k
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1
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1.6k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 30
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1.5k
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Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer
updated 13.3 years ago by ★ 1.2k • written 13.3 years ago by ★ 2.0k
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2
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2.2k
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How to extract expressed genes from Affymetrix data
GUI GUI
updated 13.3 years ago by ▴ 130 • written 13.3 years ago by ▴ 50
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9
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2.6k
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R IDE editor
GUI GUI
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 370
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12
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3.1k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI DESeq DEXSeq GUI DESeq DEXSeq
updated 13.5 years ago by ▴ 60 • written 13.5 years ago by ▴ 370
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1.4k
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iFlow error messages
GUI iFlow GUI iFlow
13.7 years ago Gabriel Nathan Kaufman, Mr ▴ 60
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2
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1.5k
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Problems normalizing scanarray express data with limma
GUI limma a4 GUI limma a4
updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 10
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0
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1.3k
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question/issue with multtest mt.maxT
Sequencing Microarray GUI Category Sequencing Microarray GUI Category
14.4 years ago Les Dethlefsen ▴ 20
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2
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1.9k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 460
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1
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1.9k
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GGtools and GGBase installation problems
GUI GGtools GGBase GUI GGtools GGBase
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 460
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1.4k
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iFlow and current Bioconductor release
GUI Cancer iFlow GUI Cancer iFlow
14.7 years ago Chao-Jen Wong ▴ 580
0
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0
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1.1k
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iFlow and current Bioconductor release
GUI iFlow GUI iFlow
14.7 years ago Gabriel Nathan Kaufman, Mr ▴ 60
0
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6
replies
1.9k
views
Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 110
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1.6k
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: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI convert EBImage GUI convert EBImage
14.9 years ago Evan Misshula ▴ 80
0
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1
reply
2.4k
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biomaRt - attribute mirbase is missing
SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega
updated 14.9 years ago by ▴ 660 • written 14.9 years ago by ▴ 460
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0
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1.5k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
14.9 years ago W. A. Green ▴ 40
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1
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1.4k
views
EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 14.9 years ago by ▴ 40 • written 14.9 years ago by ▴ 310
1
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2
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3.6k
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edgeR: error in readDGE
GUI edgeR GUI edgeR
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 10
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0
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1.3k
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Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
15.0 years ago Neel Aluru ▴ 460
0
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3
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1.6k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI PROcess convert EBImage GUI PROcess convert EBImage
updated 15.0 years ago by ▴ 310 • written 15.0 years ago by ▴ 40
0
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0
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1.4k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
15.1 years ago Neel Aluru ▴ 460
0
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5
replies
2.6k
views
iFlow error in opening FCS and LMD files
GUI iFlow GUI iFlow
updated 15.2 years ago by ▴ 140 • written 15.2 years ago by ▴ 40
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0
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1.3k
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launch of free R/Bioconductor Cloud Computing web-service
GUI GUI
15.2 years ago hbolouri@caltech.edu ▴ 10
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1
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1.1k
views
Rgraphviz in windows 7 - problem with GUI?
GUI graph Rgraphviz GUI graph Rgraphviz
updated 15.3 years ago by 16k • written 15.3 years ago by ▴ 10
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3
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1.6k
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ShortRead report function crash in x86_64-apple
GUI GUI
written 15.5 years ago by ▴ 20
0
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7
replies
2.0k
views
rMAT tutorial. Data file too large?
Preprocessing GUI rMAT Preprocessing GUI rMAT
15.5 years ago Patrick Schorderet ▴ 50
0
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1
reply
1.2k
views
iFlow error
GUI iFlow GUI iFlow
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
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votes
1
reply
1.6k
views
iFlow
GUI GUI
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
0
votes
1
reply
1.1k
views
Problems using rMAT tutorial
GUI rMAT GUI rMAT
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 50
0
votes
12
replies
4.2k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 50
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0
replies
912
views
Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
15.6 years ago Sean Davis 21k
117 results • Page 1 of 3
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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0
Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …
Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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