Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gui
•
reset
0
votes
20
replies
2.8k
views
affy won't load
GUI
affy
GUI
affy
15.9 years ago
jason smith
▴ 50
0
votes
12
replies
2.4k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI
DESeq
DEXSeq
GUI
DESeq
DEXSeq
updated 12.0 years ago by
Yue Li
▴ 60 • written 12.0 years ago by
Yue Li
▴ 370
0
votes
12
replies
3.3k
views
problems when trying to use biomaRt
GUI
biomaRt
GUI
biomaRt
updated 14.1 years ago by
Jenny Drnevich
★ 2.0k • written 14.1 years ago by
Juan Pablo Fededa
▴ 50
0
votes
9
replies
2.0k
views
R IDE editor
GUI
GUI
updated 12.0 years ago by
Aaron Brandes
▴ 10 • written 12.0 years ago by
Yue Li
▴ 370
0
votes
8
replies
3.5k
views
Error installing development version of DESeq2
GUI
DESeq2
GUI
DESeq2
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
Kristina M Fontanez
▴ 220
0
votes
7
replies
1.4k
views
rMAT tutorial. Data file too large?
Preprocessing
GUI
rMAT
Preprocessing
GUI
rMAT
14.0 years ago
Patrick Schorderet
▴ 50
0
votes
7
replies
1.2k
views
bioconductor and ESS
GUI
GUI
updated 19.1 years ago by
Liaw, Andy
▴ 360 • written 19.1 years ago by
Patrick Brown
▴ 30
0
votes
7
replies
1.8k
views
recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
GUI
GUI
20.0 years ago
Marc Salit
▴ 80
0
votes
7
replies
1.5k
views
BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI
GUI
updated 11.2 years ago by
Dan Tenenbaum
★ 8.2k • written 11.2 years ago by
Guest User
★ 13k
0
votes
6
replies
1.6k
views
Re: fileBrowser
GUI
cdf
GUI
cdf
updated 22.1 years ago by
Anthony Rossini
▴ 530 • written 22.1 years ago by
John Zhang
★ 2.9k
0
votes
6
replies
1.5k
views
flowCore - cloud() and lapply
GUI
GUI
updated 15.2 years ago by
Nishant Gopalakrishnan
▴ 340 • written 15.2 years ago by
Steve Lauriault
▴ 120
0
votes
6
replies
1.5k
views
Unable to Generate QC Report for mogene10stv1
Annotation
GO
GUI
affy
PROcess
affyQCReport
Annotation
GO
GUI
affy
PROcess
affyQCReport
updated 13.3 years ago by
James W. MacDonald
65k • written 13.3 years ago by
Rick Frausto
▴ 110
0
votes
5
replies
1.5k
views
Errors using biocLite on Apple OS X
GUI
Cancer
Breast
Biobase
GUI
Cancer
Breast
Biobase
17.8 years ago
Steven McKinney
▴ 310
0
votes
5
replies
2.1k
views
iFlow error in opening FCS and LMD files
GUI
iFlow
GUI
iFlow
updated 13.7 years ago by
Josef Spidlen
▴ 140 • written 13.7 years ago by
Anna Dvorkin
▴ 40
0
votes
4
replies
2.3k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
OLIN
EBImage
BiocInstaller
GUI
convert
OLIN
EBImage
BiocInstaller
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
3
replies
1.2k
views
ShortRead report function crash in x86_64-apple
GUI
GUI
written 14.0 years ago by
Hugo Naya
▴ 20
0
votes
3
replies
1.4k
views
Installing Packages from Bioconductor: Error
GUI
GUI
updated 19.4 years ago by
Ron Ophir
▴ 270 • written 19.4 years ago by
Eric.Grund@serono.com
▴ 20
0
votes
3
replies
1.4k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
GUI
written 20.2 years ago by
Alex F. Bokov
▴ 50
0
votes
3
replies
778
views
Bioconductor 2.4 is released
GUI
GUI
updated 14.8 years ago by
mondtanzmond
▴ 10 • written 14.8 years ago by
Bob Treder
▴ 10
0
votes
3
replies
1.4k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI
impute
DNAcopy
GUI
impute
DNAcopy
updated 11.0 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Peter Langfelder
★ 3.0k
0
votes
3
replies
1.3k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI
limma
limmaGUI
microRNA
GUI
limma
limmaGUI
microRNA
15.6 years ago • updated 15.5 years ago
Gordon Smyth
50k
0
votes
3
replies
1.1k
views
attributes of SAM files
GUI
siggenes
GUI
siggenes
updated 18.5 years ago by
James W. MacDonald
65k • written 18.5 years ago by
Assa Yeroslaviz
▴ 100
0
votes
3
replies
3.5k
views
Error installing impute package
GUI
impute
DNAcopy
GUI
impute
DNAcopy
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
Levi Waldron
▴ 80
0
votes
3
replies
1.3k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI
PROcess
convert
EBImage
GUI
PROcess
convert
EBImage
updated 13.5 years ago by
Gregoire Pau
▴ 310 • written 13.5 years ago by
W. A. Green
▴ 40
0
votes
3
replies
1.9k
views
Error: 'devel' version requires a more recent R
GUI
Cancer
easyRNASeq
GUI
Cancer
easyRNASeq
updated 11.5 years ago by
Sean Davis
21k • written 11.5 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.3k
views
limma: print-tip loess and empty spots
Normalization
GO
GUI
limma
limmaGUI
Normalization
GO
GUI
limma
limmaGUI
16.9 years ago
Gordon Smyth
50k
0
votes
3
replies
1.2k
views
Database for Microarray Data - request for user stories
Microarray
Annotation
GUI
probe
Microarray
Annotation
GUI
probe
updated 18.4 years ago by
jon butchar
▴ 50 • written 18.4 years ago by
Ido M. Tamir
▴ 320
0
votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI
hgu133plus2
affy
limma
affylmGUI
GUI
hgu133plus2
affy
limma
affylmGUI
updated 16.5 years ago by
Martin Morgan
25k • written 16.5 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.6k
views
limma: print-tip loess and empty spots
Transcription
Normalization
GUI
limma
Transcription
Normalization
GUI
limma
updated 16.9 years ago by
Adrian Steward
▴ 50 • written 16.9 years ago by
Gordon Smyth
50k
0
votes
3
replies
1.3k
views
maQualityPlots on Mac
GUI
arrayQuality
marray
GUI
arrayQuality
marray
updated 17.7 years ago by
McGee, Monnie
▴ 300 • written 17.7 years ago by
Hervé Pagès
16k
0
votes
3
replies
2.1k
views
Error: package/namespace load failed for ‘affycoretools
GO
GUI
Cancer
GO
GUI
Cancer
updated 11.4 years ago by
Steve Lianoglou
★ 13k • written 11.4 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation
GUI
Yeast
probe
Annotation
GUI
Yeast
probe
updated 19.2 years ago by
John Zhang
★ 2.9k • written 19.2 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
902
views
affy still not working
GUI
affy
GUI
affy
updated 21.2 years ago by
Jeff Gentry
★ 3.9k • written 21.2 years ago by
mary.e.logue@ucd.ie
▴ 20
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 19.8 years ago by
Gordon Smyth
50k • written 19.8 years ago by
Breuk102
▴ 50
0
votes
2
replies
1.3k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
GUI
updated 19 months ago by
Eric
• 0 • written 20.2 years ago by
Ann Loraine
▴ 30
0
votes
2
replies
1.6k
views
Help with loading newly created custom annotation db into R session
Annotation
GO
GUI
zebrafish
probe
Annotation
GO
GUI
zebrafish
probe
updated 15.3 years ago by
James W. MacDonald
65k • written 15.3 years ago by
Scott Ochsner
▴ 300
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Neel Aluru
▴ 460
0
votes
2
replies
1.2k
views
Problems normalizing scanarray express data with limma
GUI
limma
a4
GUI
limma
a4
updated 12.3 years ago by
Gordon Smyth
50k • written 12.3 years ago by
Matthew Ouellette
▴ 10
0
votes
2
replies
1.9k
views
How to extract expressed genes from Affymetrix data
GUI
GUI
updated 11.8 years ago by
Belinda Phipson
▴ 130 • written 11.8 years ago by
michelle_low
▴ 50
0
votes
2
replies
1.3k
views
Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions
GUI
trigger
GUI
trigger
updated 19.2 years ago by
James W. MacDonald
65k • written 19.2 years ago by
Betty Gilbert
▴ 50
1
vote
2
replies
3.3k
views
edgeR: error in readDGE
GUI
edgeR
GUI
edgeR
updated 13.5 years ago by
Wolfgang Huber
★ 13k • written 13.5 years ago by
村田 卓也
▴ 10
0
votes
2
replies
975
views
newbie Q about object identity
GUI
Biobase
genefilter
GUI
Biobase
genefilter
updated 16.6 years ago by
Martin Morgan
25k • written 16.6 years ago by
Thomas Elliott
▴ 20
0
votes
2
replies
1.3k
views
Installation Problems
GUI
GUI
17.7 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
973
views
Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI
GUI
updated 21.0 years ago by
Jeff Gentry
★ 3.9k • written 21.1 years ago by
Dr Mushtaq Ahmed
▴ 20
0
votes
1
reply
655
views
Top 50 Candidate genes: "wrong" pValues and B results!
GUI
limma
GUI
limma
updated 19.8 years ago by
Gordon Smyth
50k • written 19.8 years ago by
Adrian Peres
▴ 30
0
votes
1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
Cancer
GUI
Cancer
written 20.2 years ago by
A.J. Rossini
▴ 810
0
votes
1
reply
1.3k
views
iFlow
GUI
GUI
updated 14.0 years ago by
Patrick Aboyoun
★ 1.6k • written 14.0 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
1
reply
1.1k
views
tkctk widgets
GUI
annotate
affy
GUI
annotate
affy
updated 22.1 years ago by
John Zhang
★ 2.9k • written 22.1 years ago by
rgentleman
★ 5.5k
0
votes
1
reply
1.0k
views
Agi4x44PreProcess - Replicated genes
Annotation
GUI
probe
Agi4x44PreProcess
Annotation
GUI
probe
Agi4x44PreProcess
updated 14.4 years ago by
Francois Pepin
★ 1.3k • written 14.4 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
885
views
Problems using rMAT tutorial
GUI
rMAT
GUI
rMAT
updated 14.0 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Patrick Schorderet
▴ 50
50 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
James W. MacDonald
65k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
France,
2 minutes ago
Canada,
3 minutes ago
Canada,
15 minutes ago
United States,
24 minutes ago
Ireland,
1 hour ago
Traffic: 938 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6