Showing : missMethyl • reset
3
votes
3
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3.5k
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missMethyl: Gene ontology analysis
missMethyl
8.1 years ago philipp24 ▴ 30
1
vote
3
replies
3.0k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 20
1
vote
2
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1.4k
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Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 7.7 years ago by 65k • written 7.7 years ago by • 0
0
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2
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1.4k
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prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 6.8 years ago by 50k • written 7.0 years ago by ★ 2.0k
0
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1
reply
1.3k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 6.0 years ago by ▴ 50 • written 6.9 years ago by ▴ 190
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
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3
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1.3k
views
Details of gene names in DE
missmethyl
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
0
votes
1
reply
1.2k
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missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
0
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0
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1.2k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
2
votes
6
replies
961
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No enriched GO terms CpGs
DNAMethylation missMethyl
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
2
votes
3
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942
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 16 months ago by ▴ 40 • written 16 months ago by • 0
0
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0
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913
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MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
0
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0
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911
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missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
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0
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897
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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850
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
5.9 years ago owen.whitley ▴ 10
0
votes
1
reply
818
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.8 years ago by ▴ 10 • written 3.7 years ago by ▴ 10
0
votes
2
replies
571
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 6 weeks ago by • 0 • written 11 months ago by • 0
1
vote
1
reply
564
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
0
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1
reply
496
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
12 months ago Grace • 0
0
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1
reply
484
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 9 months ago by ▴ 180 • written 9 months ago by • 0
0
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0
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367
views
goMeth
missMethyl
13 months ago anmolanp ▴ 10
0
votes
1
reply
260
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 8 weeks ago by ▴ 40 • written 9 weeks ago by • 0
23 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset) by Caio • 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Votes
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
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