Showing : pdInfoBuilder • reset
0
votes
1
reply
398
views
Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
6 months ago Seymoo • 0
2
votes
8
replies
1.8k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
4.3 years ago • updated 4.2 years ago efoss ▴ 10
2
votes
3
replies
1.8k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
6
votes
4
replies
3.3k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 5.9 years ago by ▴ 10 • written 8.4 years ago by ▴ 20
0
votes
7
replies
2.3k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 510
1
vote
3
replies
3.6k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
8.6 years ago yusuf.khan ▴ 10
3
votes
7
replies
2.1k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 9.0 years ago by 68k • written 9.5 years ago by ★ 4.1k
1
vote
5
replies
3.1k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
9.1 years ago Ed D • 0
0
votes
3
replies
3.1k
views
Draft support for HTA 2.0 with oligo
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 9.2 years ago by ▴ 10 • written 11.6 years ago by ▴ 10
1
vote
0
replies
2.6k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo pdInfoBuilder pd.hta.2.0
10.3 years ago tangboyun ▴ 30
0
votes
2
replies
1.5k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
0
votes
5
replies
2.2k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
10.5 years ago alakatos ▴ 130
1
vote
3
replies
2.9k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 40
0
votes
1
reply
1.7k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 11.4 years ago by 68k • written 11.4 years ago by ★ 13k
0
votes
0
replies
1.7k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
11.5 years ago Elena Serrano ▴ 30
0
votes
0
replies
2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.5 years ago Elena Serrano ▴ 30
0
votes
4
replies
6.8k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.5 years ago by 68k • written 11.5 years ago by ▴ 60
0
votes
3
replies
1.5k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.6 years ago by ★ 4.3k • written 11.6 years ago by ▴ 60
0
votes
1
reply
2.0k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.7 years ago by ▴ 910 • written 11.7 years ago by ★ 4.3k
0
votes
0
replies
3.7k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.7 years ago Elena Serrano ▴ 30
0
votes
1
reply
2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 290
0
votes
1
reply
1.5k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 12.0 years ago by ▴ 190 • written 12.0 years ago by ▴ 100
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.1 years ago by ▴ 50 • written 12.1 years ago by ★ 4.3k
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.1 years ago Nitesh Turaga ▴ 50
0
votes
1
reply
1.6k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ▴ 50
0
votes
4
replies
2.0k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 12.3 years ago by ★ 4.3k • written 12.3 years ago by ▴ 140
0
votes
10
replies
3.7k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ★ 13k
0
votes
7
replies
2.1k
views
install pdInfoBuilder package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Nimblegen microarray MM8_60mer_expr
Microarray Annotation oligo pdInfoBuilder Microarray Annotation oligo pdInfoBuilder
13.0 years ago Benilton Carvalho ★ 4.3k
0
votes
4
replies
2.0k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 13.0 years ago by ▴ 50 • written 13.0 years ago by ★ 13k
0
votes
3
replies
2.4k
views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 20
0
votes
2
replies
1.6k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 340
0
votes
0
replies
1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
0
votes
0
replies
1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
0
votes
2
replies
1.7k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 13.5 years ago by ★ 4.3k • written 13.6 years ago by ★ 13k
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 630
0
votes
0
replies
1.8k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
14.3 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
1
reply
1.2k
views
pdInfoBuilder
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 40
0
votes
3
replies
1.5k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
15.3 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
2
replies
1.3k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 100
0
votes
3
replies
1.5k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ★ 4.1k
0
votes
8
replies
2.6k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 15.5 years ago by 6.7k • written 15.5 years ago by ★ 4.1k
0
votes
6
replies
2.1k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 15.6 years ago by ★ 4.3k • written 15.7 years ago by ▴ 40
0
votes
0
replies
998
views
TilingFeatureSet
GO pdInfoBuilder GO pdInfoBuilder
15.8 years ago Diego Martinez ▴ 10
0
votes
1
reply
1.5k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 15.9 years ago by ▴ 430 • written 15.9 years ago by ▴ 410
0
votes
2
replies
2.1k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 16.0 years ago by ▴ 50 • written 16.0 years ago by ▴ 330
0
votes
0
replies
1.2k
views
problem with pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
16.4 years ago Elsa Aguera ▴ 10
0
votes
0
replies
1.3k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
16.6 years ago James W. MacDonald 68k
0
votes
3
replies
1.9k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
16.7 years ago Anne-Marie Madore ▴ 30
59 results • Page 1 of 2
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to ubjw24 • 0
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to shepherl 4.2k
Popular Question to Michael Love 43k
Locations • All
WEHI, Melbourne, Australia, 5 minutes ago
The city by the bay, 24 minutes ago
United States, 45 minutes ago
United States, 49 minutes ago
United States, 2 hours ago
Traffic: 696 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6