Showing : pheatmap • reset
5
votes
11
replies
2.6k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.0 years ago by 50k • written 4.0 years ago by ▴ 60
4
votes
9
replies
7.8k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
8.4 years ago Deepak Tanwar ▴ 10
4
votes
8
replies
7.9k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 6.5 years ago by 41k • written 8.7 years ago by ▴ 10
0
votes
6
replies
1.5k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 5.2 years ago by ★ 13k • written 5.2 years ago by ▴ 10
4
votes
5
replies
4.0k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2 pheatmap
8.2 years ago jarod_v6@libero.it ▴ 40
2
votes
4
replies
8.7k
views
pheatmap for DEGs
normalization pheatmap
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 20
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
2
votes
4
replies
1.8k
views
Issues with Pheatmap
pheatmap
2.1 years ago axe880 • 0
0
votes
4
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4.9k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.1 years ago by ▴ 350 • written 3.1 years ago by ▴ 10
0
votes
4
replies
15k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
1
vote
3
replies
9.9k
views
Sorting columns in pheatmap
pheatmap
updated 3.0 years ago by ▴ 80 • written 3.0 years ago by • 0
0
votes
2
replies
550
views
Heat Map
ColData pheatmap DESeq2
written 10 months ago by • 0
1
vote
2
replies
2.5k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.1 years ago John ▴ 30
0
votes
2
replies
3.8k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
0
votes
2
replies
5.0k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
0
votes
2
replies
7.8k
views
Add selected row names on pheatmap
R pheatmap
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 20
0
votes
2
replies
1.5k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 pheatmap average
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
0
votes
2
replies
1.7k
views
Unsupervised analysis problems
pheatmap unsupervised
updated 8.2 years ago by 41k • written 8.2 years ago by ▴ 40
0
votes
1
reply
242
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2 pheatmap
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
1
vote
1
reply
5.4k
views
adding margins around pheatmap plots
pheatmap
updated 7.7 years ago by ★ 13k • written 7.7 years ago by ▴ 10
8
votes
1
reply
9.2k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.2 years ago by ▴ 680 • written 7.2 years ago by ▴ 670
0
votes
1
reply
1.0k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 7.0 years ago by ▴ 680 • written 7.0 years ago by ▴ 50
0
votes
1
reply
2.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
7.0 years ago vd4mmind • 0
0
votes
1
reply
2.1k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 6.9 years ago by 41k • written 6.9 years ago by ▴ 40
1
vote
1
reply
11k
views
Pheatmap clustering and row annotation
R pheatmap cutree
6.6 years ago meseretbrihanu ▴ 10
2
votes
1
reply
2.2k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2 rld pheatmap dds
updated 6.5 years ago by 41k • written 8.6 years ago by ▴ 10
0
votes
1
reply
4.7k
views
Reordering clusters when plotting pheatmap in R
R pheatmap clusters
4.8 years ago ecg1g15 ▴ 20
0
votes
1
reply
971
views
Plotting the most expressed genes after conducting DESeq2
DESeq2 pheatmap apeglm
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 10
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
0
votes
1
reply
2.4k
views
Annotation in pheatmap
pheatmap
updated 21 months ago by ★ 3.9k • written 21 months ago by • 0
0
votes
0
replies
2.7k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
6.5 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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6.5k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
7.5 years ago jarod_v6@libero.it ▴ 40
1
vote
0
replies
2.6k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
8.6 years ago AJC ▴ 10
33 results • Page 1 of 1
Recent ...
Replies
Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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Scholar to Rory Stark ★ 5.2k
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