Bioconductor Shiny

Showing : shiny • reset

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744

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shiny EBImage

2.5 years ago Wolfgang Huber ★ 13k

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1.1k

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ChAMP shiny ChAMPdata

updated 2.9 years ago by anna.stanislawska • 0 • written 2.9 years ago by Mari • 0

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967

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BatchQC RNA-seq R Shiny batch-effect

4.8 years ago manninm • 0

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1.2k

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AnnotationHub Shiny Rstudio

updated 4.9 years ago by shepherl 4.1k • written 4.9 years ago by bwiley4 • 0

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1.5k

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iSEE shiny summarizedExperiment News

5.8 years ago Aaron Lun ★ 28k

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1.8k

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deseq2 shiny design rhandsontable hot_to_r()

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by hinkel2 • 0

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2.2k

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DEBrowser shiny

6.1 years ago tomasfly • 0

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1.7k

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rtracklayer browsegenome shiny

updated 6.3 years ago by Michael Lawrence ★ 11k • written 6.3 years ago by vivek82 • 0

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6.5k

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shiny package deploy

6.9 years ago lloyd.izard ▴ 80

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1.6k

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SC3 single-cell shiny

updated 7.7 years ago by Vladimir Kiselev ▴ 150 • written 7.7 years ago by cfustero ▴ 20

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1.9k

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ChAMP Epigenetics plotly Shiny GUI News

8.3 years ago • updated 8.0 years ago Yuan Tian ▴ 90

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1.3k

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shiny

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by bhakti.dwivedi • 0

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1.5k

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cellcode shiny heatmap

updated 8.8 years ago by Andrzej Oleś ▴ 750 • written 8.8 years ago by christopher.clarskon15 ▴ 20

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1.8k

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limmagui shiny

8.8 years ago christopher.clarskon15 ▴ 20

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4.0k

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annotation genomicranges visualization docker shiny Tutorial

8.9 years ago Vincent J. Carey, Jr. 6.7k

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2.0k

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R validate shiny

9.3 years ago alptaciroglu ▴ 50

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3.0k

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shiny network interactions

10.2 years ago pshannon ▴ 100

17 results • Page 1 of 1

Recent ...

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0