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shiny
•
reset
0
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0
replies
982
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
3.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.4k
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 3.8 years ago by
anna.stanislawska
• 0 • written 3.9 years ago by
Mari
• 0
0
votes
0
replies
1.2k
views
Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
5.8 years ago
manninm
• 0
0
votes
1
reply
1.4k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 5.9 years ago by
shepherl
4.3k • written 5.9 years ago by
bwiley4
• 0
6
votes
0
replies
1.7k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
6.8 years ago
Aaron Lun
★ 29k
0
votes
7
replies
2.2k
views
Problems with DESeq2 'design' parameter using Shiny/rhandsontable
deseq2
shiny
design
rhandsontable
hot_to_r()
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
hinkel2
• 0
0
votes
1
reply
2.6k
views
DEBrowser shiny - Maximum upload size exceeded - error
DEBrowser
shiny
7.0 years ago
tomasfly
• 0
0
votes
3
replies
2.1k
views
browseGenome with Shiny
rtracklayer
browsegenome
shiny
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
vivek82
• 0
12
votes
3
replies
7.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
7.8 years ago
lloyd.izard
▴ 80
3
votes
3
replies
1.9k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 8.7 years ago by
Vladimir Kiselev
▴ 150 • written 8.7 years ago by
cfustero
▴ 20
0
votes
1
reply
2.1k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
9.2 years ago • updated 9.0 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.6k
views
R packages developed using shiny
shiny
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
bhakti.dwivedi
• 0
1
vote
1
reply
1.8k
views
reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 9.7 years ago by
Andrzej Oleś
▴ 750 • written 9.7 years ago by
christopher.clarskon15
▴ 20
0
votes
1
reply
2.1k
views
shiny account on mac not deploying server
limmagui
shiny
9.8 years ago
christopher.clarskon15
▴ 20
7
votes
0
replies
4.6k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
9.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
2.1k
views
Shiny - error messages with validate
R
validate
shiny
10.3 years ago
alptaciroglu
▴ 50
1
vote
7
replies
3.5k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
11.2 years ago
pshannon
▴ 100
17 results • Page
1 of 1
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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Lluís Revilla Sancho
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nromerov
• 0
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Thomas Girke
★ 1.7k
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Gordon Smyth
53k
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Stephanie M. Gogarten
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