Bioconductor Shiny

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shiny EBImage

3.3 years ago Wolfgang Huber ★ 13k

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1.3k

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ChAMP shiny ChAMPdata

updated 3.6 years ago by anna.stanislawska • 0 • written 3.6 years ago by Mari • 0

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1.1k

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BatchQC RNA-seq R Shiny batch-effect

5.5 years ago manninm • 0

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AnnotationHub Shiny Rstudio

updated 5.6 years ago by shepherl 4.2k • written 5.6 years ago by bwiley4 • 0

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iSEE shiny summarizedExperiment News

6.5 years ago Aaron Lun ★ 29k

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by hinkel2 • 0

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DEBrowser shiny

6.8 years ago tomasfly • 0

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rtracklayer browsegenome shiny

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by vivek82 • 0

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shiny package deploy

7.6 years ago lloyd.izard ▴ 80

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1.8k

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SC3 single-cell shiny

updated 8.4 years ago by Vladimir Kiselev ▴ 150 • written 8.4 years ago by cfustero ▴ 20

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2.0k

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ChAMP Epigenetics plotly Shiny GUI News

9.0 years ago • updated 8.8 years ago Yuan Tian ▴ 90

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1.5k

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shiny

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by bhakti.dwivedi • 0

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1.7k

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cellcode shiny heatmap

updated 9.5 years ago by Andrzej Oleś ▴ 750 • written 9.5 years ago by christopher.clarskon15 ▴ 20

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limmagui shiny

9.6 years ago christopher.clarskon15 ▴ 20

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annotation genomicranges visualization docker shiny Tutorial

9.6 years ago Vincent J. Carey, Jr. 6.7k

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R validate shiny

10.0 years ago alptaciroglu ▴ 50

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shiny network interactions

11.0 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

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