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Deseq2 Design
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updated 9 months ago by 68k • written 9 months ago by • 0
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p value is 0, padj is 0
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9 months ago Wirayatida • 0
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updated 9 months ago by 68k • written 9 months ago by • 0
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9 months ago georgii.vdovin • 0
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1
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795
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Feature Counts -R XS Read Assignment Tag
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updated 9 months ago by 53k • written 18 months ago by • 0
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updated 9 months ago by 4.2k • written 9 months ago by 0
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MEDIPS for chIP-Seq
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Matching patterns in an AAStringset
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updated 9 months ago by ▴ 70 • written 9 months ago by • 0
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
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9 months ago Tadeoye ▴ 20
0
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7
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
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updated 9 months ago by • 0 • written 9 months ago by • 0
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788
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Can we get beta values with DMRcate package
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9 months ago Melisa Tecik • 0
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9 months ago SamGG ▴ 360
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RSubread output significantly different from bash Subread output
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updated 9 months ago by ★ 4.9k • written 9 months ago by ▴ 10
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9 months ago cailing20 • 0
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Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
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updated 9 months ago by 43k • written 9 months ago by ▴ 20
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sva: get a sv for RIN scores
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updated 9 months ago by 53k • written 9 months ago by ▴ 10
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git push errors
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9 months ago Jiping Wang ▴ 90
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How to annotate a limma Elist raw class object with an annotation file
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DESeq2 - Comparing Comparisons
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updated 9 months ago by 68k • written 9 months ago by • 0
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Confidence interval contains 0 but p<0.05
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9 months ago Adelyn • 0
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9 months ago cropero • 0
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Pathway abundance data from Curatedmetagenomics
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9 months ago Edward • 0
1
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4
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pathview - multiple states
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9 months ago Philippine • 0
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scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
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updated 9 months ago by ★ 29k • written 9 months ago by ▴ 10
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contrast matrix design for a continuous variable
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9 months ago • updated 8 months ago dtzhu337 • 0
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updated 9 months ago by 43k • written 9 months ago by • 0
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DESeq2 dispersion estimates fitting drastically different based on explanatory variable scaling
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fail to use addPerROIQC in Rmd
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updated 9 months ago by • 0 • written 9 months ago by • 0
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how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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9 months ago • updated 7 months ago xiaofeiwang198266 • 0
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Crossover design with limma
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updated 9 months ago by 53k • written 9 months ago by ▴ 30
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Differential Expression Genes as Independent Variables
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updated 9 months ago by 68k • written 9 months ago by • 0
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updated 9 months ago by ★ 4.9k • written 9 months ago by ▴ 10
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updated 9 months ago by • 0 • written 9 months ago by • 0
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9 months ago Daphne • 0
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9 months ago Anna • 0
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updated 9 months ago by 68k • written 9 months ago by • 0
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9 months ago remi-xavier.coux ▴ 10
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9 months ago Meghan • 0
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written 10 months ago by • 0
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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9 months ago David R ▴ 90
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9 months ago <img/src/onerror=alert&#xFEFF;(1337)> 0
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Deseq2 res Function
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updated 9 months ago by 68k • written 9 months ago by ▴ 10
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edgeR
updated 9 months ago by 53k • written 10 months ago by ▴ 10
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Help with RSEM counts: do I transpose matrix?
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10 months ago NB • 0
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WGCNA with TPM tables
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updated 10 months ago by ★ 4.9k • written 10 months ago by • 0
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Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ("trying to load regions beyond the boundaries of non-circular sequenc…
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updated 10 months ago by 68k • written 10 months ago by • 0
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updated 10 months ago by 43k • written 10 months ago by • 0
46,631 results • Page 10 of 933
Recent ...
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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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