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1
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842
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In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowick TomType
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updated 11 months ago by ★ 5.0k • written 11 months ago by • 0
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updated 11 months ago by 68k • written 11 months ago by • 0
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11 months ago charlie.wright • 0
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3
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4
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11 months ago SofieK • 0
0
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2
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597
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11 months ago a.alkema • 0
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2
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accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
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updated 11 months ago by • 0 • written 11 months ago by • 0
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3
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How to compare expression levels of genes between scRNAseq and bulkRNAseq?
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1
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updated 11 months ago by 43k • written 4.7 years ago by • 0
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updated 11 months ago by 43k • written 5.3 years ago by • 0
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updated 11 months ago by 43k • written 11 months ago by • 0
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11 months ago info ▴ 10
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updated 11 months ago by ★ 29k • written 11 months ago by • 0
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11 months ago yf • 0
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0
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1
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updated 11 months ago by 43k • written 11 months ago by • 0
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0
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My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
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11 months ago cftattersfield • 0
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0
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11 months ago Maria Doyle ▴ 110
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11 months ago ingrid.h • 0
2
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2
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11 months ago Quang NN ▴ 10
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3
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updated 11 months ago by • 0 • written 11 months ago by • 0
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9
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updated 11 months ago by ★ 3.4k • written 13 months ago by ▴ 20
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666
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updated 11 months ago by ★ 5.0k • written 12 months ago by • 0
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11 months ago Vinesh • 0
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1
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updated 11 months ago by 68k • written 11 months ago by • 0
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2
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11 months ago Blandine • 0
0
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5
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1
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490
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affymetrix
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1
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updated 11 months ago by ★ 4.1k • written 11 months ago by • 0
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Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19)
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12 months ago • updated 11 months ago ja.garcia • 0
0
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4
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12 months ago • updated 11 months ago Quang NN ▴ 10
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1
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551
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updated 12 months ago by 43k • written 12 months ago by • 0
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0
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Problem with PCAtool as dependencie
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12 months ago Silvia • 0
1
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2
replies
496
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
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0
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0
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cnvEQTL : Error in cpm.default(y, lib.size = lib.size) : NA counts not allowed
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12 months ago xiaofeiwang18266 ▴ 60
3
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5
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2.3k
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updated 12 months ago by 68k • written 12 months ago by ▴ 10
0
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1
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436
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updated 12 months ago by 68k • written 12 months ago by • 0
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updated 12 months ago by 68k • written 12 months ago by • 0
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1
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updated 12 months ago by 68k • written 12 months ago by ▴ 60
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Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
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Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
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