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Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
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Michael Love
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
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Michael Love
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The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup.
Maybe give the traceb…
Answer: PTM analysis in LIMPA
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For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
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