0
votes
1
reply
594
views
Using EBI Image on Ranged Bar Chart
EBImage
written 4 months ago by • 0
1
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3
replies
1.1k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
4 months ago • updated 3 months ago Konstantinos Yeles ▴ 90
0
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2
replies
808
views
edgeR in DMR mode - replicates give batch effect - how to build design matrix with condition and replicate
edgeR
updated 4 months ago by ▴ 110 • written 4 months ago by • 0
0
votes
2
replies
478
views
GBCC2025: New Scholarship Opportunities Available!
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updated 4 weeks ago by • 0 • written 4 months ago by ▴ 100
0
votes
0
replies
214
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Blank gene_id in featureCounts
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4 months ago Meg • 0
2
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5
replies
1.2k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 4 months ago by ▴ 110 • written 4 months ago by ▴ 10
0
votes
1
reply
475
views
FCS 32 support going backwards?
flowCore
updated 3 months ago by • 0 • written 4 months ago by • 0
0
votes
1
reply
412
views
Typo in the help of lmFit()
limma
updated 4 months ago by 53k • written 4 months ago by • 0
0
votes
2
replies
947
views
Memory issue while using "quickcluster" and "computeSumFactors" functions on single cell RNA seq dataset with 7-9 lac cells
scran
updated 4 months ago by ★ 4.9k • written 4 months ago by • 0
4
votes
4
replies
2.0k
views
Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatmap
DESeq2 ComplexHeatmap
4 months ago • updated 3 months ago caroline.zanchi ▴ 10
0
votes
2
replies
611
views
Limma suqeezeVar
limma
4 months ago Mengchun • 0
0
votes
0
replies
266
views
What Input-type do I use in decouplR::run_viper?
decoupleR viper
updated 3 months ago by 43k • written 4 months ago by • 0
0
votes
2
replies
582
views
Limma trend with limpa
limpa limma trend
updated 3 months ago by 53k • written 4 months ago by • 0
0
votes
1
reply
365
views
DESeq2 from phyloseq error
DESeq2 phyloseq
4 months ago asafpr • 0
0
votes
0
replies
222
views
Combining COMBAT-seq result (raw count) with other raw count
rnaseq combat-seq sva combat bulk-rnaseq
4 months ago dudwnsrla1 • 0
0
votes
1
reply
438
views
Can't install BioC packages (and manager) behind firewall
Install
updated 4 months ago by 700 • written 4 months ago by • 0
1
vote
2
replies
1.1k
views
GSVA 1.52.2 (new API) nb of workers?
parallelize workers GSVA
written 15 months ago by • 0
0
votes
2
replies
509
views
How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignments?
GenomicAlignments
updated 4 months ago by 16k • written 4 months ago by • 0
4
votes
2
replies
1.3k
views
GAlignments Cigar to GRanges
GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar
4 months ago pineiroalejandro ▴ 10
3
votes
3
replies
542
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AnnotationHub/ExperimentHub resources backup
AnnotationHub HubPub ExperimentHub
updated 4 months ago by 68k • written 4 months ago by ▴ 50
6
votes
8
replies
5.4k
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WGCNA coupled with differential expression analysis: question about baseline module detection
wgcna WGCNA
written 5.4 years ago by ▴ 60
0
votes
2
replies
5.0k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
updated 9 weeks ago by • 0 • written 2.5 years ago by • 0
3
votes
1
reply
558
views
DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
DESeq2 apeglm
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
0
replies
924
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
4 months ago Muhammad • 0
0
votes
0
replies
11
views
Spam: County Group Wave City Ghaziabad
ri16cod.db ncdfFlow
4 months ago countywavecityghaziabad 0
1
vote
5
replies
1.3k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 4 months ago by 68k • written 4 months ago by ▴ 10
0
votes
1
reply
363
views
Error in readCodelinkSet function
error codelink
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
1
reply
613
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Combat-seq usage
sva
4 months ago • updated 3 months ago bbao ▴ 10
0
votes
1
reply
406
views
Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 4 months ago by ★ 4.9k • written 4 months ago by • 0
0
votes
1
reply
347
views
What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 4 months ago by 4.2k • written 4 months ago by • 0
2
votes
5
replies
1.1k
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Dealing with heteroscedascity in limma
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written 4 months ago by • 0
0
votes
3
replies
52k
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SingleR Label.Ont
SingleR
written 2.0 years ago by • 0
5
votes
7
replies
3.2k
views
limma correction for tumor purity
limma
4 months ago gabriella.jacobson-eisenberg ▴ 20
0
votes
1
reply
411
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Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
2
replies
595
views
FlowSOM is unable to create Output
FlowSOM
updated 4 months ago by • 0 • written 4 months ago by • 0
8
votes
3
replies
3.0k
views
DESeq2 class error: superclass "ExpData" not defined in the environment of the object's class
DESeq2
updated 3 months ago by 43k • written 4 months ago by ▴ 40
0
votes
5
replies
734
views
Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
TxDb.Mmusculus.UCSC.mm10.knownGene
written 6 months ago by ▴ 140
2
votes
4
replies
1.6k
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Filtering after DESeq
DESeq2 IHW
written 5 months ago by ▴ 10
0
votes
4
replies
1.2k
views
DESEQ2 - Correctly altering log2foldchange when switching comparison direction (HELP GREATLY APPRECIATED)
DESeq2
4 months ago sk • 0
0
votes
3
replies
900
views
Model performance for spline modelling of RNA-seq timecourses in edgeR
edgeR limma
written 5 months ago by ▴ 10
0
votes
2
replies
787
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Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 5 months ago by • 0
2
votes
5
replies
1.7k
views
Unable to install a forged BSgenome package
BSgenomeForge
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
6
replies
1.7k
views
Discrepancies in normalised count data vs unnormalised
DESeq2
4 months ago • updated 3 months ago AMgroup • 0
0
votes
2
replies
637
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Design formula for circadian time-course data for vst() function
DESeq2
4 months ago Vishnu • 0
2
votes
6
replies
2.9k
views
Check removeBatchEffect effectiveness
RNAseq limma removeBatchEffect
4 months ago massimo • 0
0
votes
0
replies
396
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
4 months ago jamiecatalano2 • 0
1
vote
3
replies
1.2k
views
CluserProfiler message "No gene can be mapped"
clusterProfiler
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
1
reply
376
views
RNA-seq input to GRaNIE
GRaNIE
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
1
reply
637
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
updated 5 months ago by ▴ 80 • written 10 months ago by • 0
0
votes
2
replies
775
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Analyzing TnSeq data with DESeq2
DESeq2
written 5 months ago by • 0
46,634 results • Page 4 of 933
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Comment: EuroBioC2024 abstract submission is open! by leoblevins38 • 0
The difficulty of the game [Space Waves][1] gradually rises as it goes on. In order to help players become accustomed to the rhythm, early …
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107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
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Am I using Bioc-devel?
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Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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