0
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1
reply
342
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PTM analysis in LIMPA
limpa
updated 6 weeks ago by 53k • written 12 weeks ago by • 0
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3
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309
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Incosistencies in buildSNNGraph() function
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4
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490
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Question about the filterByExpr function inputs in edgeR
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6 weeks ago mohammedtoufiq91 ▴ 10
2
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5
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970
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Joining different datasets and analyzing using the group-specific condition effects strategy (DESeq2)
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Ensembl site unresponsive via biomaRt
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192
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Development of MSstat workflow to analyze DIA time series data
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3
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540
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Clarification on counting in Rsubread (featureCounts)
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3
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16
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0
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MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
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6 weeks ago srkingwu • 0
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0
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1
reply
532
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org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
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0
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1
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364
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News: Opportunity to host EuroBioC2026 Preconference workshops!
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2
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ChAMP pipeline error (champ.import)
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0
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3
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408
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DECIPHER DesignProbes unable to design FISH-probes
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2
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3
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Guitar R package requires update due to dependency GenomicFeatures
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Problem with the TMB plot
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2
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3
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296
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please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
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written 7 weeks ago by ▴ 10
10
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44
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Ensembl plants at annotationHub?
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Is it possible to install previous versions of the packages instead of the newest ones?
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2
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4
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Converting Probe IDs to HGNC symbols
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0
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0
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11
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0
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0
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Job: Job:Computational Biologist position at the University of Alabama at Birmingham
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4
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How does contrasts.fit do in limma to extract comparisons with a model having interaction terms?
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updated 7 weeks ago by • 0 • written 10 weeks ago by • 0
0
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3
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416
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How to do differential expresion across time serise with edgeR?
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updated 8 weeks ago by 53k • written 8 weeks ago by ▴ 10
0
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2
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252
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ATACseq rudimentary questions
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9 weeks ago • updated 8 weeks ago 4747 • 0
0
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4
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blockwiseModule crashes in the end and doesn't generate modules
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written 2.9 years ago by • 0
0
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2
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490
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Empty boxes in treemap plot rrvgo package
rrvgo
written 7 months ago by • 0
1
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3
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1.4k
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nice 3D displays for PCA analysis
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updated 9 weeks ago by • 0 • written 9.8 years ago by ▴ 670
0
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1
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400
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Job: Bioinformatician at the Lausanne University Hospital
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0
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1
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428
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
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written 11 weeks ago by • 0
0
votes
3
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370
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segfault in edgeR glmQLFit
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updated 9 weeks ago by 53k • written 10 weeks ago by • 0
0
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1
reply
455
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written 3 months ago by • 0
0
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2
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451
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DESeq2 on non-RNASeq counts data
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0
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1
reply
247
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PFAM formats changed - is it still possible to use this with ISA?
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0
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8
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2.5k
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athPkgBuilder data source :missing probesets
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2.2k
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How can I correctly use phyloseq with Docker?
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updated 11 weeks ago by • 0 • written 10 months ago by • 0
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1.3k
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p.adjust BH Question
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1
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2
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2
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written 7 months ago by ▴ 10
1
vote
4
replies
599
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Large logFC but somewhat high FDR
limpa
3 months ago • updated 12 weeks ago JKim • 0
0
votes
2
replies
362
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problem reading bam files into nucleR
nucleR
updated 12 weeks ago by 68k • written 3 months ago by ▴ 10
0
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0
replies
14
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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0
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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0
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
3
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6
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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written 3 months ago by • 0
0
votes
2
replies
644
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After running samtools, the featureCounts command crashed.
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updated 3 months ago by • 0 • written 5 months ago by • 0
0
votes
1
reply
283
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Question about DESeq2 Design for Paired Treatment Study
DESeq2
updated 3 months ago by ★ 5.0k • written 3 months ago by • 0
0
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1
reply
1.4k
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two questions about limma
Microarray limma Microarray limma
updated 3 months ago by 53k • written 19.0 years ago by ▴ 240
1,000 results • Page 3 of 20
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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