0
votes
0
replies
647
views
FW: Plate 20081202PD10 in service holding
15.5 years ago Yogi Sundaravadanam ▴ 320
0
votes
4
replies
325
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
11 weeks ago mperalc • 0
0
votes
1
reply
2.0k
views
Warning messages with biocLite()
bioclite
9.5 years ago Robert Baer ▴ 70
1
vote
0
replies
933
views
Bioconductor for predicting transcription factors from a gene list?
transcription transcriptdb
7.0 years ago hkarakurt ▴ 20
0
votes
0
replies
985
views
maskedBSgenome - cannot enable masks
mask bsgenome
8.5 years ago kielpinski • 0
0
votes
1
reply
982
views
Use of Scater for QC in scRNA-seq: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
updated 23 months ago by ★ 4.1k • written 23 months ago by • 0
0
votes
0
replies
1.1k
views
Problem importing 5C data
importing HiTC
9.1 years ago gugpuccio ▴ 10
0
votes
0
replies
753
views
Single cell WGS and ATAC-seq tools
single cell singlecellexperiment atac seq WGS
3.8 years ago lirongrossmann ▴ 80
0
votes
0
replies
605
views
Using VIPER to compare protein activity in normal vs diseased samples
viper
2.4 years ago tjbencomo • 0
0
votes
0
replies
1.3k
views
What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
6.3 years ago jol.espinoz ▴ 40
0
votes
1
reply
781
views
How is it possible to override the constructor of the GRanges class?
genomicranges granges
5.4 years ago Shaurya Jauhari • 0
0
votes
1
reply
979
views
Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 14 months ago by ▴ 70 • written 15 months ago by • 0
0
votes
0
replies
1.2k
views
Conversion of a CEL file readable by Notepad
19.2 years ago S Peri ▴ 320
0
votes
0
replies
1.1k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
10.0 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
613
views
how to find DE genes using both of 51bp data and 100bp data
11.7 years ago wang peter ★ 2.0k
0
votes
0
replies
384
views
Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome ?
Metagenomics metagenomeSeq microbiome phyloseq microbiomeDataSets
9 months ago Mohamed ▴ 30
0
votes
0
replies
926
views
Log transformation and left censoring
limma safe edgeR limma safe edgeR
11.3 years ago Paul Harrison ▴ 100
0
votes
2
replies
896
views
Running DEXSeq in a distributed setting
DEXSeq LSF Distributed Computing
7.0 years ago vakul.mohanty ▴ 20
0
votes
0
replies
2.2k
views
GOSeq with unsupported organism (Arabidopsis) and retrieving gene IDs from enriched GO categories
GO Organism PROcess goseq GO Organism PROcess goseq
10.2 years ago Dale Richardson ▴ 30
0
votes
0
replies
842
views
Critical Assessment of Microarray Data Analysis - CAMDA07 Conference Announcement
Microarray Microarray
16.9 years ago Ana Conesa ▴ 340
0
votes
0
replies
457
views
Any problems with R 1.9.1?
19.9 years ago Jenny Drnevich ★ 2.2k
2
votes
1
reply
1.2k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
0
replies
768
views
Microarrays intersection to expand your discovery
Microarray Cancer Microarray Cancer
12.9 years ago Tata Mumu ▴ 10
0
votes
2
replies
1.0k
views
Turnaround for bioc-sync to join organization team for git-svn bridge?
git-svn bridge bioc-sync
9.0 years ago rcavalca ▴ 140
1
vote
0
replies
1.4k
views
Trouble pickSoftThreshold() large dataset WGCNA
r wgcna
8.3 years ago sventhedestroyer ▴ 10
0
votes
0
replies
864
views
COURSE: R and Bioconductor courses at Imperial College London
Microarray Microarray
13.7 years ago North, Bernard V ▴ 120
0
votes
0
replies
105
views
Cannot use `readVcf()` on a file created with `writeVcf()`
VariantAnnotation
5 weeks ago Stevie Pederson • 0
0
votes
0
replies
611
views
enrichplot pakage no output plot
go
4.1 years ago Hamidreza Hashemi ▴ 20
0
votes
0
replies
506
views
test
20.0 years ago xpzhang ▴ 90
0
votes
0
replies
1.2k
views
manova contrast.matrix
maanova maanova
14.4 years ago David ▴ 860
0
votes
2
replies
1.3k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
8.3 years ago areyoujokingme • 0
0
votes
0
replies
1.3k
views
[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing Infrastructure Sequencing Infrastructure
12.5 years ago Ido M. Tamir ▴ 150
0
votes
0
replies
732
views
Ringo question
15.3 years ago Jianping Jin ▴ 890
0
votes
0
replies
1.7k
views
Intergenic assigned to genes by ChIPseeker
chipseeker txdb.mmusculus.ucsc.mm10.knowngene
6.4 years ago doan.dinh • 0
0
votes
2
replies
5.6k
views
What does this mean?
software error
8.2 years ago xlyan011 • 0
0
votes
0
replies
731
views
goCluster plot interpretation
goCluster goCluster
17.9 years ago Tabare Mourot ▴ 100
0
votes
0
replies
718
views
e-LICO multi-omics prediction challenge with background knowledge on Obstructive Nephropathy
13.7 years ago Adam Woznica ▴ 10
0
votes
1
reply
1.1k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
6.0 years ago neuro3030 • 0
0
votes
0
replies
784
views
Re: Rghraphviz
Rgraphviz PROcess Rgraphviz PROcess
19.1 years ago Seth Falcon ★ 7.4k
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
4.9 years ago m93 ▴ 10
0
votes
0
replies
580
views
getGene function and size limit
18.0 years ago Tabare Mourot ▴ 100
0
votes
0
replies
468
views
Using the AnnBuilder package for other organisms
18.8 years ago Bornman, Daniel M ▴ 110
0
votes
2
replies
839
views
OPLS-DA: confidence interval for accuracy metric
Metabolomics
21 months ago Eddie • 0
0
votes
0
replies
761
views
Bug in gcrma_0.4.0?
Microarray Cancer gcrma Microarray Cancer gcrma
20.8 years ago James W. MacDonald 65k
0
votes
0
replies
964
views
Can't normalize with alternative affy CDF environment
Annotation Normalization Preprocessing cdf affy gcrma Annotation Normalization cdf affy
19.2 years ago Ken Termiso ▴ 250
0
votes
0
replies
539
views
Announcement-VPCZOALHTGRBY.pdf
16.9 years ago shed ▴ 10
0
votes
0
replies
550
views
generalisation in the use of cclust (library cclust)
Clustering Clustering
19.0 years ago emmanuelle.anthoine1@etud.univ-ubs.fr ▴ 10
0
votes
0
replies
1.1k
views
Plotting arbitrary lines at Gviz plotTracks
9.7 years ago Vinicius Henrique da Silva ▴ 40
0
votes
0
replies
590
views
automation / interactivity of plots on S-PLUS
graph graph
19.6 years ago Florence Combes ▴ 120
4
votes
4
replies
865
views
visualization problem with BioMM package
BioMM
3.9 years ago parra.sev ▴ 20
1,000 results • Page 1 of 20
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Locations • All
The city by the bay, 9 minutes ago
WEHI, Melbourne, Australia, 23 minutes ago
Sweden, 32 minutes ago
Melbourne, Australia, 45 minutes ago
Hong Kong, 2 hours ago
Traffic: 373 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6