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The Call for Abstracts for BioC2026 is open!
Bioconductor
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written 8 days ago by
laurah ondari
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12 days ago
laurah ondari
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written 29 days ago by
Frances Turner
▴ 20
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shepherl
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News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
updated 1 day ago by
a2a2haa
• 0 • written 11 months ago by
info
▴ 10
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1
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News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
updated 1 day ago by
a2a2haa
• 0 • written 7 months ago by
Wei Shi
★ 3.6k
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328
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News:
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Bioconductor
written 7 weeks ago by
laurah ondari
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2
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425
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News:
Important: Bioconductor Release 3.22 Delayed
release
written 3 months ago by
shepherl
4.3k
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2
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474
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News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
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biomaRt
ensembldb
written 10 weeks ago by
Ensembl_Jorge
▴ 10
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News:
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written 10 weeks ago by
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News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
12 weeks ago
Maria Doyle
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7
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presentation
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written 3.0 years ago by
Maria Doyle
▴ 110
2
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600
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shepherl
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408
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News:
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ensembl
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Ensembl_Jorge
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195
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Course: Single-cell analysis with R/Bioconductor
SingleCellExperiment
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5 months ago
Ludwig Geistlinger
▴ 80
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431
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TAB
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written 6 months ago by
shepherl
4.3k
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3
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1.6k
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biomaRt
ensembldb
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News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 24 months ago by
Maria Doyle
▴ 110
2
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News:
Bioconductor 3.21 is Released!
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10 months ago
shepherl
4.3k
0
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0
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421
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News:
Introduction to Epigenomics data analysis with R and Bioconductor course (online) - 14th-18th April
chipseq
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10 months ago
info
▴ 10
0
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1.0k
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News:
List of Deprecated Packages for Bioc3.20
Release
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Bioconductor
15 months ago • updated 10 months ago
shepherl
4.3k
0
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676
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News:
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devel
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Devel
10 months ago
shepherl
4.3k
0
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0
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794
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10 months ago
shepherl
4.3k
0
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0
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677
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News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
11 months ago
Maria Doyle
▴ 110
0
votes
1
reply
901
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News:
Gene Set Enrichment Analysis in Bioconductor course
GSEABase
GeneSetEnrichment
goseq
11 months ago
info
▴ 10
0
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0
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10
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594
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News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
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GBCC2025
Bioconductor
12 months ago
Maria Doyle
▴ 110
0
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0
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480
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News:
Mass Spectrometry and Proteomics with R/Bioconductor course
cadd.v1.6.hg38
12 months ago
info
▴ 10
0
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0
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338
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News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
12 months ago
Maria Doyle
▴ 110
1
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0
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711
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News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
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Africa
Bioconductor
12 months ago
Maria Doyle
▴ 110
0
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0
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610
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News:
Online course: Gene set enrichment analysis in R/Bioconductor
GSEABenchmarkeR
13 months ago
info
▴ 10
0
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4
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2.3k
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News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.8 years ago by
Maria Doyle
▴ 110
0
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1
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9
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updated 14 months ago by
shepherl
4.3k • written 14 months ago by
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1
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1.7k
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News:
Bioconductor 3.20 is Released!
Bioconductor
Release
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15 months ago
shepherl
4.3k
0
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0
replies
485
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News:
RNAseq data analysis with R/Bioconductor (4-15 November)
DESeq2
GenomicRanges
15 months ago
info
▴ 10
0
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0
replies
616
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News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
15 months ago
Maria Doyle
▴ 110
0
votes
11
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2.9k
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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
23 months ago • updated 15 months ago
shepherl
4.3k
0
votes
0
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1.2k
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News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
16 months ago
Ensembl_Jorge
▴ 10
3
votes
4
replies
3.4k
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News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 9 months ago by
randyprice13102000
• 0 • written 17 months ago by
shepherl
4.3k
0
votes
0
replies
626
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News:
Single-cell RNA-seq analysis with R/Bioconductor (online course)
SingleCellExperiment
SingleCell
16 months ago
info
▴ 10
0
votes
0
replies
696
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News:
RNAseq data analysis with Bioconductor (online course)
DESeq2
SummarizedExperiment
16 months ago • updated 15 months ago
info
▴ 10
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1
reply
933
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News:
Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics
xcms
updated 16 months ago by
Harry
• 0 • written 16 months ago by
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Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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