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0
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0
replies
879
views
lumi / RSQLite warning
lumi
4.2 years ago
stewart999
▴ 10
0
votes
0
replies
579
views
limma question: direct two-color design & modeling individual subject effects
probe
limma
probe
limma
17.0 years ago
Paul Shannon
★ 1.1k
1
vote
1
reply
1.1k
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
2.9 years ago
schum266
▴ 10
0
votes
0
replies
829
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways
PROcess
BRAIN
Pathways
PROcess
BRAIN
16.8 years ago
Neddy
▴ 10
0
votes
0
replies
194
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
8 weeks ago
Felix
• 0
0
votes
0
replies
1.1k
views
Mapping genes to their gene sets for GSEA
Microarray
Genetics
GO
hgu95av2
hgug4112a
Microarray
Genetics
GO
hgu95av2
hgug4112a
11.9 years ago
Yoo, Seungyeul
▴ 110
0
votes
0
replies
964
views
Order of input files in Shearwater
deepSNV
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Asma rabe
▴ 290
0
votes
0
replies
540
views
Dentists Directory in America
15.1 years ago
Pickett councilman
▴ 10
0
votes
0
replies
871
views
Illumina annotation packages discrepancy
Annotation
probe
lumi
Annotation
probe
lumi
15.4 years ago
Renaud Gaujoux
▴ 170
0
votes
0
replies
598
views
Can't access biomaRt with mysql
biomaRt
biomaRt
15.7 years ago
Richard Pearson
▴ 390
0
votes
0
replies
506
views
ChipPeakAnno question about file conversion
convert
ChIPpeakAnno
convert
ChIPpeakAnno
12.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
780
views
possible spam alert
17.3 years ago
Kimpel, Mark W
▴ 890
0
votes
0
replies
3.4k
views
Retrieving genes by their genome locations in biomart
biomaRt
biomaRt
16.1 years ago
Steffen
▴ 500
0
votes
0
replies
661
views
Filtering probesets for HuEx ST1.0 after probeset normalization
microarray
exons
probefiltering
5.5 years ago
GENOMIC_region
• 0
0
votes
0
replies
565
views
Do p-values of Gene Significance per gene need to be FDR corrected?
WGCNA
3.4 years ago
Miguel.Cosenza
▴ 10
0
votes
0
replies
1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.3 years ago
b1gorsuch@comcast.net
▴ 20
0
votes
0
replies
917
views
Differential Expression Analyses of Entire Connectivity Map (microarray) dataset
differential expression
microarray
R
8.8 years ago
Bioinformatist Newbie
• 0
0
votes
0
replies
905
views
POE/metaArray error
metaArray
metaArray
13.4 years ago
Sheena Scroggins
▴ 30
0
votes
4
replies
2.4k
views
Error in H5Fopen with kallisto .h5 files
tximport
kallisto
rhdf5
5.1 years ago
uso2015
• 0
1
vote
2
replies
808
views
when does the DOI become active?
CONSTANd
newpackage
updated 2.9 years ago by
guido.barzaghi
• 0 • written 3.2 years ago by
joris.vanhoutven
▴ 10
0
votes
0
replies
719
views
Bioconductor Digest, Vol 107, Issue 31
edgeR
edgeR
12.3 years ago
Tilahun Abebe
▴ 30
0
votes
0
replies
767
views
calling SAM using siggenes package
convert
convert
19.5 years ago
Aedin Culhane
▴ 310
0
votes
0
replies
966
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
6.0 years ago
JoeMG
• 0
0
votes
0
replies
934
views
European Developers' Meeting 2013
10.5 years ago
Jonathan Cairns
▴ 60
0
votes
0
replies
532
views
Re: labelling AffyRNAdeg curves
19.9 years ago
Leslie Cope
▴ 20
0
votes
0
replies
880
views
topTable in limma
16.6 years ago
Gordon Smyth
50k
0
votes
0
replies
645
views
create GeneSetCollection from OBOCollection
GO
convert
GOstats
GO
convert
GOstats
12.3 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
512
views
Problem with PAM using R 1.9.0
19.9 years ago
Betten, Mark
▴ 10
0
votes
0
replies
1.1k
views
Need help with pdInfoBuilder package for human ST arrays
Annotation
affy
oligo
pdInfoBuilder
Annotation
affy
oligo
pdInfoBuilder
13.9 years ago
He, Yiwen NIH/CIT
▴ 360
0
votes
0
replies
2.6k
views
How to normalize-transform rsem.genes.results of TCGA RNA-seq v2?
tcga
rnaseq
rsem
R
normalization
7.1 years ago
panagiotis.mokos
▴ 40
0
votes
0
replies
955
views
Mouse/Human Affy Gene ST 1.0 arrays
Normalization
Normalization
13.0 years ago
fire1976 wyoming
▴ 380
0
votes
0
replies
1.0k
views
Help with generating network from gene expression data
gene expression
network
cytoscape
6.3 years ago
torgeirous
• 0
0
votes
1
reply
738
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 3.4 years ago by
alex.pico
▴ 20 • written 3.8 years ago by
ellisjc
• 0
0
votes
0
replies
647
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization
limma
limmaGUI
Normalization
limma
limmaGUI
20.6 years ago
ying chen
▴ 30
0
votes
0
replies
640
views
running AnnBuilder Vignette:Error in baseFile
AnnBuilder
AnnBuilder
18.1 years ago
Xue Lin
▴ 10
0
votes
0
replies
1.0k
views
error while using queryAE function for human transcription profiling experiments
ArrayExpress
microarray
R
7.7 years ago
deepue
▴ 10
0
votes
0
replies
864
views
peer review
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
502
views
filtering on external genelist
17.0 years ago
Oleg Moskvin
▴ 30
0
votes
0
replies
870
views
ggbio: axis in karyogram line graph overlay
ggbio
7.9 years ago
map2085
▴ 40
0
votes
0
replies
202
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
11 weeks ago
mat149
▴ 70
0
votes
0
replies
621
views
forcePositive background option from lumiB
14.6 years ago
Scott Ochsner
▴ 300
0
votes
0
replies
1.0k
views
It works: RE: using custom BSgenome with MEDIPS
BSgenome
BSgenome
MEDIPS
BSgenome
BSgenome
MEDIPS
10.4 years ago
Vining, Kelly
▴ 220
0
votes
0
replies
625
views
Example in SLqPCRdata package
15.1 years ago
Daren Tan
▴ 120
0
votes
0
replies
654
views
Re: offer from I Neuhaus to create a BMS response; keep incore, please
GO
affy
GO
affy
20.9 years ago
Park, Richard
▴ 220
0
votes
0
replies
850
views
draw more than one gate on a yxplot (flowViz)
14.0 years ago
Manuel Ramon
▴ 10
0
votes
1
reply
732
views
vegdist for beta diversity
vegan
4.8 years ago
Jitendra
▴ 10
0
votes
0
replies
788
views
LIMMA Error Message:Error in new("AnnotatedDataFrame", data = phenotypicdata) : trying to generate an object from a virtual class ("AnnotatedDataFram…
Cancer
limma
Cancer
limma
15.3 years ago
Martin Morgan
25k
0
votes
0
replies
939
views
biomaRt and wormbase: gene dataset
biomaRt
biomaRt
18.0 years ago
Giovanni Coppola
▴ 250
0
votes
3
replies
841
views
I have a problem when I run DESeq2 with one variable with 8 levels, I can't find the contrast for any comparison with level 8
Contrast
factors
levels
18 months ago
Edgar
• 0
0
votes
0
replies
667
views
lmma for lumi- request for help design matrix/contrast matrix
limma
lumi
limma
lumi
14.5 years ago
Maria Dolores Serafica
▴ 30
1,000 results • Page
2 of 20
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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