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33
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ChAMP installation issue
Cha
ChAMP
updated 1 hour ago by
shepherl
3.9k • written 8 hours ago by
e1271094
• 0
0
votes
0
replies
20
views
Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
9 hours ago
Lupe
• 0
0
votes
0
replies
37
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
23 hours ago
Seungmin
• 0
0
votes
0
replies
44
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
1 day ago
Matthew Thornton
▴ 350
0
votes
0
replies
47
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
2 days ago
315005358
• 0
0
votes
1
reply
80
views
error
Biobase
2 days ago
NATASHA
• 0
0
votes
0
replies
39
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
3 days ago
neilzhao
▴ 30
2
votes
7
replies
288
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
5 days ago • updated 2 days ago
sajadahmad41454
• 0
0
votes
0
replies
44
views
Treeio as.treedata function seq lenght error
treeio
5 days ago
nromerov
• 0
0
votes
0
replies
62
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
6 days ago
Dinesh
• 0
0
votes
0
replies
103
views
dba.plotProfile() plotting and interpretation
DiffBind
9 days ago
Henry
▴ 10
0
votes
0
replies
82
views
flowStats for CyTOF
flowStats
10 days ago
tholmes
• 0
0
votes
0
replies
77
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
10 days ago
yvonneh
• 0
0
votes
0
replies
72
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
10 days ago
Ian D.
▴ 70
0
votes
3
replies
191
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 11 days ago by
ATpoint
★ 4.1k • written 11 days ago by
james.zhang20
• 0
0
votes
0
replies
126
views
Empty table plot using plotGseaTable()
fgsea
11 days ago • updated 9 days ago
Chris
▴ 10
0
votes
0
replies
85
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
13 days ago
Chris
▴ 10
0
votes
0
replies
132
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
18 days ago • updated 10 days ago
glaciya2018
• 0
0
votes
0
replies
94
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
18 days ago • updated 14 days ago
Sara
• 0
0
votes
0
replies
92
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
19 days ago
Dario Strbenac
★ 1.5k
0
votes
8
replies
365
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 18 days ago by
swbarnes2
★ 1.4k • written 19 days ago by
Aaliya
• 0
0
votes
2
replies
259
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
20 days ago • updated 18 days ago
shuwangxinze1996
• 0
2
votes
13
replies
453
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
21 days ago • updated 18 days ago
fernanda.backsouza
▴ 10
0
votes
0
replies
86
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
22 days ago
vaxahey107
• 0
0
votes
0
replies
102
views
I am trying to detect alternative splicing.
ASpli
22 days ago
Sebashish
• 0
0
votes
0
replies
129
views
Warning while loading DEP package
DEP
updated 24 days ago by
shepherl
3.9k • written 24 days ago by
Namrata
• 0
1
vote
2
replies
228
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
25 days ago • updated 24 days ago
Le
• 0
1
vote
2
replies
168
views
Error in champ.load(): The following specified files do not exist
ChAMP
25 days ago • updated 24 days ago
Sherin
• 0
0
votes
1
reply
105
views
Input Question for deseq.r
RSeqAn
updated 25 days ago by
ATpoint
★ 4.1k • written 25 days ago by
Nina
• 0
0
votes
4
replies
248
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
25 days ago • updated 23 days ago
lonn
• 0
0
votes
0
replies
88
views
Enzyme Engineering
BioTIP
26 days ago
bocchemistry
• 0
0
votes
0
replies
97
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
26 days ago
Maliha Tabassum
• 0
0
votes
1
reply
127
views
what is the sampleFiles
chipseq
updated 26 days ago by
James W. MacDonald
65k • written 27 days ago by
zhulin
• 0
0
votes
0
replies
101
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
27 days ago
Virangika
• 0
0
votes
0
replies
77
views
[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
27 days ago
Henry
▴ 10
0
votes
1
reply
138
views
Deseq2 Rlog transformation
DESeq2
updated 28 days ago by
ATpoint
★ 4.1k • written 29 days ago by
Sahar
• 0
2
votes
2
replies
179
views
[DiffBind] Obtaining normalization factors
DiffBind
4 weeks ago • updated 27 days ago
Henry
▴ 10
0
votes
3
replies
271
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 24 days ago by
W. Evan Johnson
▴ 850 • written 4 weeks ago by
schlumbohm
• 0
0
votes
1
reply
173
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 28 days ago by
Guido Hooiveld
★ 3.9k • written 4 weeks ago by
Lucie
• 0
0
votes
2
replies
268
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 23 days ago
isaac.vock
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 25 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
1
vote
3
replies
877
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 19 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 3 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
43 results • Page
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Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Votes
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
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