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0
votes
0
replies
562
views
Installation of a custom cdf hs133phsentrezgcdf
Cancer
hgu133plus2
cdf
Cancer
hgu133plus2
cdf
14.9 years ago
Martin Morgan
25k
0
votes
0
replies
1.0k
views
Bioconductor/R workshop for high-throughput data analysis (web version)
Sequencing
Microarray
Sequencing
Microarray
10.6 years ago
gregory voisin
▴ 430
0
votes
0
replies
1.0k
views
GAGE heatmap pdf question...
GO
gage
GO
gage
12.1 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.3k
views
Open PhD Position - Bioinformatics in collaboration with SAP
Proteomics
Proteomics
12.0 years ago
Amin Moghaddasi
▴ 130
0
votes
1
reply
1.8k
views
write ab1 files
sangerseqr
sequencing
abi
6.6 years ago
tmolosh
• 0
0
votes
0
replies
795
views
shinyMethyl issue when using combinedArrays() from minfi - Error in object@greenControls[[i]][, o] : incorrect number of dimensions
shinyMethyl
minfi
3.1 years ago
Jeff
▴ 20
0
votes
0
replies
910
views
limma - genas: unexpected warnings
10.4 years ago
Guido Hooiveld
★ 3.9k
0
votes
0
replies
920
views
[OT] Job Opening: Bioinformatician at OpenAnalytics (Belgium)
ASSET
ASSET
11.3 years ago
Tobias Verbeke
▴ 50
0
votes
0
replies
638
views
Best way of presenting a sub-fraction of edgeR RNAseq gene expression results in a publication
edgeR
edgeR
10.3 years ago
Gordon Smyth
50k
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
443606623
• 0
1
vote
0
replies
835
views
Creat PWM from Alignment with Gaps
10.6 years ago
Lakshmanan Iyer
▴ 250
0
votes
4
replies
1.6k
views
TCGABiolinks not available for R3.3.0
TCGA
tcgabiolinks
R
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
j.ritchie
• 0
0
votes
0
replies
361
views
Distance between columns vs distance between rows and SVD
distance
svd
15 months ago
Lenny186
• 0
0
votes
0
replies
1.0k
views
Biostatistician/Statistical Programmer/Data Analyst
16.8 years ago
Holden-Wiltse, Jeanne
▴ 10
0
votes
0
replies
874
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd
RankProd
10.0 years ago
Stefanie Busch
▴ 30
1
vote
4
replies
291
views
EDAseq to normalise for both gene-length and GC-content
norma
EDASeq
EDA
Normalization
6 weeks ago
samuel.channon
• 0
0
votes
0
replies
728
views
AgiMicroRna and ComBat
miRNA
probe
AgiMicroRna
miRNA
probe
AgiMicroRna
13.9 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
665
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation
probe
Annotation
probe
10.8 years ago
Levi Waldron
★ 1.1k
0
votes
0
replies
598
views
Cross-cultivar RNA-seq analysis
RNA
Normalization
3.0 years ago
nancy
• 0
0
votes
0
replies
638
views
R/BioC workshops in Southern California
Sequencing
Clustering
Sequencing
Clustering
15.2 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
700
views
Bioconductor Digest, Vol 118, Issue 25
11.4 years ago
federico.comoglio
▴ 100
0
votes
1
reply
365
views
To check samples in manifest that do not have IDAT files
software error
4.9 years ago
pspooja111
• 0
0
votes
0
replies
601
views
[Fwd: Re: Problem installing hexbin?]
hexbin
hexbin
18.0 years ago
David Henderson
▴ 100
0
votes
0
replies
1.2k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
3.3 years ago
jol.espinoz
▴ 40
0
votes
0
replies
639
views
limma report logFC confidence interval?
Regression
Regression
13.4 years ago
Timothy Wu
▴ 120
0
votes
0
replies
428
views
diffcyt - topTable function returns one total significance estimate instead of one per comparison
limma
diffcyt
edgeR
2.0 years ago
stefanos.bamopoulos
• 0
0
votes
1
reply
1.4k
views
Annotationhub V2.16.1 Error info
annotation
software error
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
chaimol
• 0
0
votes
0
replies
968
views
BIRD 08: Call for participants
16.0 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
467
views
TCGAbiolinks GDCprepare produces error in vectbl_as_col_location()
TCGAbiolinks
18 months ago
lescano
▴ 10
0
votes
0
replies
911
views
DEBrowser Build errors
debrowser
7.0 years ago
alper.kucukural
▴ 10
0
votes
0
replies
756
views
Stay in touch with me through LinkedIn
Network
Network
11.3 years ago
Shreyartha Mukherjee
▴ 80
0
votes
0
replies
620
views
What is the maximaze number(size) of cel files can PC handle?
cdf
affy
cdf
affy
19.7 years ago
Joyce Gu
▴ 200
0
votes
0
replies
796
views
SAM with censored survival data on exprSet
Survival
siggenes
Survival
siggenes
17.6 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
768
views
How to get the raw numbers of annotated features by ChIPseeker?
ChIPseeker
3.6 years ago
bioinfouser2
▴ 10
0
votes
0
replies
1.1k
views
Courses in Practical DNA Microarray Analysis 2006
Microarray
Genetics
Pathways
Preprocessing
Classification
Cancer
Microarray
Genetics
18.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
770
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.1 years ago
414457044
• 0
0
votes
0
replies
1.6k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.6 years ago
b a
▴ 40
0
votes
1
reply
441
views
ATACseqQC and Rsamtools scanBam
software error
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
gleuzzi.gl
• 0
0
votes
0
replies
979
views
Any package like genefilter for NGS?
Microarray
genefilter
Microarray
genefilter
13.7 years ago
Xiaohui Wu
▴ 280
0
votes
0
replies
1.3k
views
Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0
limma
batch effect
affymetrix microarrays
ComBat
7.0 years ago
svlachavas
▴ 830
0
votes
1
reply
983
views
Dotplot from enricher outputting very few genes
clusterProfiler
enrichplot
updated 23 months ago by
Guido Hooiveld
★ 3.9k • written 23 months ago by
Lucía
▴ 10
0
votes
3
replies
1.5k
views
How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r
bioinformatics
peakset
updated 13 months ago by
montuorikandi1759
• 0 • written 8.3 years ago by
Jurat Shahidin
▴ 80
0
votes
0
replies
540
views
limma Common Reference Analysis
limma
limma
17.0 years ago
Khan, Sohail
▴ 490
0
votes
0
replies
516
views
AUTO: Pie Müller is out of the office. (returning 30.04.2013)
11.0 years ago
Pie.Mueller@unibas.ch
▴ 40
0
votes
0
replies
881
views
HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
679
views
affylmGUI error
limma
limma
14.9 years ago
Glyn Bradley
▴ 40
0
votes
1
reply
3.0k
views
NA values of count matrix in class DESeqDataSet
rnaseq
recount
6.6 years ago
maleknias
• 0
1
vote
5
replies
1.1k
views
Need help for ProStaR Stand-alone install
Prostar
updated 23 months ago by
Wang
• 0 • written 2.4 years ago by
benoit.marchand
• 0
0
votes
0
replies
840
views
package contribution DEADLINE for BioC 2.1: Aug 27
Cancer
Cancer
16.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
771
views
differential expression, model selection and F-tests of nested models
Cancer
limma
Cancer
limma
20.0 years ago
Ramon Diaz
★ 1.1k
1,000 results • Page
2 of 20
Recent ...
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Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
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