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Bioconductor
•
reset
2
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replies
32
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
18 hours ago
shepherl
3.8k
0
votes
0
replies
42
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
2 days ago
Maria Doyle
▴ 70
1
vote
0
replies
256
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
13 days ago • updated 12 days ago
BioinfGuru
▴ 30
0
votes
0
replies
81
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
20 days ago
shepherl
3.8k
0
votes
7
replies
385
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
4 weeks ago
needNGS
• 0
0
votes
2
replies
173
views
bioconductor emailing list
Bioconductor
updated 5 weeks ago by
shepherl
3.8k • written 5 weeks ago by
1427972815
• 0
0
votes
0
replies
139
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
5 weeks ago
Maria Doyle
▴ 70
1
vote
0
replies
176
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc204
5 weeks ago
shepherl
3.8k
1
vote
2
replies
253
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
8 weeks ago • updated 7 weeks ago
thomas
• 0
0
votes
0
replies
168
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
8 weeks ago
Maria Doyle
▴ 70
1
vote
0
replies
267
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
10 weeks ago • updated 8 weeks ago
shepherl
3.8k
0
votes
1
reply
301
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 6 weeks ago by
howell
• 0 • written 10 weeks ago by
Maria Doyle
▴ 70
0
votes
0
replies
169
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
11 weeks ago
Maria Doyle
▴ 70
2
votes
0
replies
237
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
11 weeks ago
Maria Doyle
▴ 70
0
votes
1
reply
224
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 11 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 11 weeks ago by
vanbelj
▴ 30
1
vote
4
replies
426
views
Can't post a question containing code?
Bioconductor
updated 11 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 11 weeks ago by
DS
▴ 10
0
votes
1
reply
200
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 12 weeks ago by
Hervé Pagès
16k • written 12 weeks ago by
Xin Wang
• 0
6
votes
11
replies
975
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 10 weeks ago
gernophil
• 0
0
votes
0
replies
219
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
3 months ago
shepherl
3.8k
2
votes
1
reply
276
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 3 months ago by
shepherl
3.8k
2
votes
2
replies
307
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Marek Gierlinski
▴ 30
4
votes
3
replies
335
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Marek Gierlinski
▴ 30
0
votes
4
replies
721
views
Bioconductor installation
Bioconductor
written 3 months ago by
Akhil
• 0
3
votes
1
reply
309
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 3 months ago by
shepherl
3.8k
0
votes
0
replies
270
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
4 months ago
info
▴ 10
0
votes
0
replies
238
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
2
votes
0
replies
483
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago
Maria Doyle
▴ 70
0
votes
0
replies
284
views
News:
CRAN downtime
BiocManager
Bioconductor
5 months ago
shepherl
3.8k
2
votes
4
replies
616
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 5 months ago by
shepherl
3.8k • written 5 months ago by
lavanilla44
• 0
0
votes
3
replies
553
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
6 months ago • updated 5 months ago
blessybo
• 0
0
votes
1
reply
336
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 6 months ago by
shepherl
3.8k • written 6 months ago by
Marek Gierlinski
▴ 30
5
votes
1
reply
434
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.8k
0
votes
0
replies
362
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
6 months ago
info
▴ 10
2
votes
1
reply
847
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ningyuan
• 0
2
votes
11
replies
931
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 12 weeks ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
cinzia.spagnoli
• 0
5
votes
2
replies
748
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
0
votes
2
replies
639
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
nilanjanamani88
• 0
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by
Manuel
• 0 • written 7 months ago by
xlu.cpu
• 0
0
votes
1
reply
3.5k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Aytaç
• 0
0
votes
2
replies
922
views
MACS2 not installing
Bioconductor
8 months ago
alia.sinqua
• 0
0
votes
0
replies
624
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
8 months ago
NewtoBioconductor
• 0
0
votes
2
replies
780
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
1
reply
387
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
laura1_z
• 0
1
vote
4
replies
754
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago
patrick.turko
• 0
1
vote
2
replies
658
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Ashton
▴ 10
0
votes
0
replies
447
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
9 months ago
Maria Doyle
▴ 70
0
votes
2
replies
2.4k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago
Avner
• 0
0
votes
1
reply
473
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
9 months ago
Arianna
• 0
0
votes
1
reply
601
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 9 months ago by
Mike Smith
★ 6.5k • written 9 months ago by
Catia
• 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 9 months ago by
Vincent J. Carey, Jr.
6.7k • written 9 months ago by
Ndimensional
▴ 20
50 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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