Showing : ClusterProfiler • reset
3
votes
4
replies
5.1k
views
Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo the categories to visualize
clusterProfiler enrichGO ComplexHeatmap
updated 3 months ago by 68k • written 3 months ago by ▴ 10
1
vote
3
replies
1.2k
views
CluserProfiler message "No gene can be mapped"
clusterProfiler
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
3
replies
1.2k
views
Gene Ontology (GO) Analysis
GOstats hyperGTest GO enrichGO clusterProfiler
5 months ago GA ▴ 10
0
votes
1
reply
486
views
Error in cnetplot
enrichplot clusterProfiler
updated 6 months ago by ★ 4.1k • written 6 months ago by • 0
0
votes
1
reply
703
views
KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
clusterProfiler KEGG
7 months ago Jessica • 0
0
votes
4
replies
919
views
How to sort negative log2FC or FC in RNAseq for GSEA?
DESeq2 GSEA clusterProfiler
8 months ago Quang NN ▴ 10
2
votes
2
replies
853
views
clusterProfiler enrichGO on only T-cell related GO terms
clusterProfiler
updated 11 months ago by ★ 1.2k • written 11 months ago by • 0
7
votes
9
replies
1.9k
views
clusterProfiler: BgRatio N value does not match the size of the gene universe that has GO annotations.
GO clusterProfiler enr
updated 12 months ago by ★ 4.1k • written 12 months ago by • 0
0
votes
5
replies
1.4k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 12 months ago by ▴ 760 • written 13 months ago by • 0
1
vote
2
replies
3.0k
views
How to use compareCluster in ClusterProfiler?
RNASeqData GSEA clusterProfiler
written 13 months ago by • 0
0
votes
1
reply
1.2k
views
question about gseGO() in clusterprofiler package
clusterProfiler
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
1
vote
5
replies
2.1k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 13 months ago by • 0
2
votes
4
replies
1.5k
views
# Invalid keytype: GOALL. Please use the keytypes method to see a listing of valid arguments.
clusterProfiler makeOrgPackage gseGO
updated 13 months ago by 68k • written 13 months ago by • 0
1
vote
2
replies
815
views
Question on number of genes used in GO analysis
GO clusterProfiler
14 months ago Danté • 0
1
vote
1
reply
1.3k
views
Differences between core_enrichment from gsePathway and viewPathway
FunctionalAnalysis clusterProfiler viewPathway gsePathway
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
3
votes
1
reply
1.9k
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 15 months ago by ★ 4.1k • written 15 months ago by ▴ 10
1
vote
2
replies
1.1k
views
GESA with certain gene list returns no result with human genom, but many result with mouse genom.
clusterProfiler
16 months ago sawa • 0
1
vote
9
replies
3.1k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 15 months ago by 68k • written 16 months ago by ▴ 10
0
votes
1
reply
794
views
How can I get gseGO to return all GO terms tested?
clusterProfiler clusterp
updated 16 months ago by 68k • written 16 months ago by • 0
8
votes
6
replies
8.6k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 16 months ago by ▴ 30 • written 6.4 years ago by ▴ 180
0
votes
4
replies
1.4k
views
error running enricher from clusterprofiler
clusterProfiler cluster
17 months ago Yael • 0
0
votes
1
reply
1.4k
views
Gene set enrichment analysis
clusterProfiler GeneSetEnrichment
updated 17 months ago by ★ 4.1k • written 17 months ago by • 0
1
vote
1
reply
681
views
Cannabis OrgDb
KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware
updated 17 months ago by 68k • written 17 months ago by ▴ 30
5
votes
13
replies
3.7k
views
Trying to use enrichGO
clusterProfiler GenomicDistributionsData KEGG
17 months ago fernanda.backsouza ▴ 30
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 17 months ago by 68k • written 17 months ago by • 0
1
vote
2
replies
2.4k
views
geneList error in clusterprofiler
clusterProfiler GeneSetEnrichment
17 months ago Ana • 0
2
votes
4
replies
2.2k
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
written 18 months ago by • 0
0
votes
2
replies
2.6k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 6 weeks ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
576
views
How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
clusterProfiler ggpubr
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
0
replies
649
views
Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
clusterProfiler gseKEGG
18 months ago andromeda • 0
2
votes
2
replies
1.3k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 18 months ago by ▴ 10
4
votes
4
replies
5.1k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 18 months ago by • 0 • written 7.8 years ago by ▴ 20
2
votes
2
replies
1.7k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
18 months ago Eva ▴ 10
3
votes
9
replies
7.8k
views
enrichGOgradient color change
clusterProfiler
updated 9 months ago by • 0 • written 23 months ago by • 0
1
vote
1
reply
671
views
Clsuter Profiler "counts"
enrich clusterProfiler
updated 20 months ago by 68k • written 20 months ago by • 0
2
votes
15
replies
2.5k
views
Problems with enrichGO
clusterProfiler enrichGO
updated 20 months ago by 43k • written 20 months ago by • 0
0
votes
3
replies
1.5k
views
Unable to install clusterProfiler
clusterProfiler
updated 20 months ago by • 0 • written 20 months ago by • 0
0
votes
2
replies
1.3k
views
Problem with buildGOmap from clusterProfiler
clusterProfiler
20 months ago mello-vieira • 0
0
votes
1
reply
1.3k
views
ClusterProfiler result question: Why are all many of my resulting p.adjust values the same???
clusterProfiler
updated 20 months ago by 68k • written 20 months ago by • 0
4
votes
2
replies
1.2k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 20 months ago by ★ 4.1k • written 21 months ago by • 0
0
votes
3
replies
2.4k
views
How can we use the organism database created by makeorgPackageFromNCBI to KEGG and GO analysis using clusterprofiler package.
clusterProfiler OrganismDb
updated 22 months ago by ★ 4.1k • written 22 months ago by • 0
3
votes
6
replies
4.2k
views
Result from GSEA for non-model organism not as expected
clusterProfiler
updated 22 months ago by 68k • written 3.0 years ago by ▴ 10
0
votes
9
replies
2.0k
views
It's possible to use clusterProfiler without an annotationDBI package
clusterProfiler
22 months ago nromerov • 0
2
votes
9
replies
3.5k
views
object HPOGENE is not exported by namespace HPO.db
clusterProfiler HPO.db
updated 23 months ago by ▴ 50 • written 23 months ago by ▴ 30
3
votes
4
replies
2.8k
views
Annotation hub and clusterProfiler errors
clusterProfiler Annotationhub
updated 23 months ago by ★ 4.1k • written 23 months ago by • 0
0
votes
2
replies
1.1k
views
Differential Expression Cutoffs for n = 1
clusterProfiler DESeq2
24 months ago • updated 23 months ago georgii.vdovin • 0
0
votes
0
replies
845
views
clusterProfiler code to GO enrichment analysis seems to be incomplete
clusterProfiler DifferentialExpression
24 months ago nromerov • 0
0
votes
2
replies
2.1k
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
1
vote
2
replies
2.1k
views
Cluster profiler emap plot - what are the annotations?
clusterProfiler emapplot
2.1 years ago fluentin44 • 0
0
votes
2
replies
3.3k
views
apply clusterProfiler::simplify on merge_result list
clusterProfiler
2.1 years ago Valéria • 0
288 results • Page 1 of 6
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Joseph • 0
Popular Question to zhe ▴ 20
Locations • All
USA, Los Angeles, USC, 37 minutes ago
Australia, 1 hour ago
United States, 2 hours ago
United States, 2 hours ago
United States, 2 hours ago
Traffic: 507 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6