Bioconductor DMR

Showing : DMR • reset

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1.4k

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DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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923

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bumphunter DMR methylation minfi

4.3 years ago i.s.brorson • 0

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3.6k

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bsseq dmr ttest pvalue

updated 8.3 years ago by James W. MacDonald 65k • written 8.3 years ago by enricoferrero ▴ 660

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1.5k

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dmrcate dmr analysis dmr

updated 7.3 years ago by Tim Peters ▴ 180 • written 7.3 years ago by alexandria.andrayas ▴ 10

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Ellen O • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.3 years ago by l.kremer • 0

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by enricoferrero ▴ 660

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.4 years ago by rafa ▴ 60 • written 7.4 years ago by chelsey.ju • 0

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860

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DMR bumphunter EPIC chip

4.3 years ago i.s.brorson • 0

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809

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ChAMP DMR

updated 4.0 years ago by Yuan Tian ▴ 290 • written 4.0 years ago by olive8306 • 0

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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545

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edgeR DMR

updated 16 months ago by Michael Love 42k • written 16 months ago by Fiona • 0

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755

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.6 years ago AST ▴ 60

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1.4k

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bumphunter DMR doparallel multicore

updated 10 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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717

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

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1.7k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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736

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BiSeq testClusters error dmr

3.9 years ago akhaira • 0

20 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180