Showing : FlowCore • reset
0
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464
views
FCS 32 support going backwards?
flowCore
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
0
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272
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
8 months ago vpochic • 0
0
votes
0
replies
605
views
How to fix fix $PnR in flowCore
flowCore
updated 15 months ago by 68k • written 15 months ago by • 0
1
vote
1
reply
853
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 17 months ago by ▴ 360 • written 19 months ago by ▴ 30
0
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0
replies
745
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
20 months ago info ▴ 10
0
votes
6
replies
2.0k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 21 months ago by ▴ 360 • written 21 months ago by • 0
1
vote
1
reply
760
views
How to read fcs3.2 files
flowCore
updated 21 months ago by 68k • written 21 months ago by ▴ 10
0
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2
replies
837
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
22 months ago mrescan • 0
0
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0
replies
763
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
2.2 years ago aguirre ▴ 20
0
votes
2
replies
913
views
Unable to access Git links.
Source flowCore Repository git
updated 2.4 years ago by 4.2k • written 2.4 years ago by • 0
0
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0
replies
757
views
Merging 2 staining panels
FlowCytometry flowCore
2.5 years ago michaela.gregorova13 • 0
0
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0
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1.0k
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.6 years ago pawel.malecki • 0
2
votes
1
reply
1.5k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.8 years ago aguirre ▴ 20
0
votes
0
replies
891
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.8 years ago Dennis.hinkel • 0
2
votes
9
replies
2.7k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 3.0 years ago by ▴ 360 • written 3.0 years ago by • 0
0
votes
0
replies
1.2k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
3.4 years ago hamiltond ▴ 10
0
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0
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1.5k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
3.5 years ago hamiltond ▴ 10
0
votes
0
replies
1.1k
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.5 years ago nmchavez • 0
0
votes
0
replies
1.0k
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
3.5 years ago nmchavez • 0
0
votes
0
replies
901
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.7 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.3k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.5 years ago by • 0 • written 3.8 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Job: Bioconductor developer
FlowCytometry flowCore
3.8 years ago markkelly1983 ▴ 20
0
votes
1
reply
963
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.9 years ago Rainer • 0
0
votes
1
reply
1.3k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 4.0 years ago by ★ 1.3k • written 4.4 years ago by • 0
0
votes
1
reply
2.3k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 4.0 years ago by ★ 1.3k • written 4.4 years ago by • 0
0
votes
1
reply
1.7k
views
Re-naming $PnS parameters
flowCore
updated 4.5 years ago by ▴ 360 • written 4.5 years ago by • 0
2
votes
3
replies
1.5k
views
Getting number of datasets with flowCore
flowCore
updated 4.5 years ago by ▴ 360 • written 4.5 years ago by ▴ 10
1
vote
1
reply
2.2k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 4.6 years ago by ▴ 360 • written 4.6 years ago by • 0
0
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0
replies
974
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.8 years ago GFM ▴ 20
1
vote
6
replies
1.9k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.8 years ago by ▴ 360 • written 4.8 years ago by • 0
0
votes
8
replies
2.5k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 24 months ago by • 0 • written 4.9 years ago by ▴ 30
3
votes
10
replies
3.5k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 3.3 years ago by ▴ 360 • written 5.3 years ago by ▴ 30
0
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1
reply
1.1k
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.3 years ago by ▴ 310 • written 5.5 years ago by • 0
2
votes
2
replies
2.2k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by ▴ 30
4
votes
5
replies
1.8k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by • 0
0
votes
0
replies
940
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
5.5 years ago palffy.karoly • 0
0
votes
2
replies
1.4k
views
flowCore not displaying FL gates
flowCore
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by • 0
2
votes
4
replies
1.7k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.8 years ago chandra.swarnendu • 0
0
votes
1
reply
2.5k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.8 years ago by ★ 1.3k • written 5.9 years ago by ▴ 10
1
vote
3
replies
1.7k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
6.0 years ago cahyasu88 • 0
1
vote
0
replies
1.2k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
6.1 years ago nina.hahn • 0
3
votes
2
replies
1.4k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
6.1 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.7k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
6.1 years ago rdlr • 0
0
votes
1
reply
1.1k
views
Issue creating transformed filter in flowCore
flowCore
updated 6.2 years ago by ▴ 310 • written 6.2 years ago by • 0
4
votes
4
replies
1.9k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 6.2 years ago by ▴ 310 • written 6.2 years ago by ▴ 90
3
votes
1
reply
2.6k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 6.2 years ago by ▴ 310 • written 6.2 years ago by • 0
2
votes
3
replies
2.5k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 6.2 years ago by ▴ 310 • written 6.2 years ago by • 0
1
vote
4
replies
2.4k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 6.3 years ago by ▴ 310 • written 6.3 years ago by ▴ 70
0
votes
0
replies
1.1k
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
6.4 years ago kovacik • 0
1
vote
5
replies
2.5k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
6.5 years ago carlos.x.martinez-fleites • 0
210 results • Page 1 of 5
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Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0
Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…
Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k
What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…
Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0
Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…
Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …
Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k
> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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