Showing : FlowCore • reset
0
votes
0
replies
351
views
How to fix fix $PnR in flowCore
flowCore
updated 6 months ago by 67k • written 6 months ago by • 0
1
vote
1
reply
560
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 9 months ago by ▴ 360 • written 10 months ago by ▴ 30
0
votes
0
replies
520
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
11 months ago info ▴ 10
0
votes
6
replies
1.6k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 12 months ago by ▴ 360 • written 12 months ago by • 0
1
vote
1
reply
614
views
How to read fcs3.2 files
flowCore
updated 12 months ago by 67k • written 12 months ago by ▴ 10
0
votes
2
replies
678
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
13 months ago mrescan • 0
0
votes
0
replies
593
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
17 months ago aguirre ▴ 20
0
votes
2
replies
736
views
Unable to access Git links.
Source flowCore Repository git
updated 20 months ago by 4.1k • written 20 months ago by • 0
0
votes
0
replies
592
views
Merging 2 staining panels
FlowCytometry flowCore
22 months ago michaela.gregorova13 • 0
0
votes
0
replies
746
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
22 months ago pawel.malecki • 0
2
votes
1
reply
1.3k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.1 years ago aguirre ▴ 20
0
votes
0
replies
727
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.1 years ago Dennis.hinkel • 0
2
votes
9
replies
2.2k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.3 years ago by ▴ 360 • written 2.3 years ago by • 0
0
votes
0
replies
991
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.7 years ago hamiltond ▴ 10
0
votes
0
replies
1.3k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.8 years ago hamiltond ▴ 10
0
votes
0
replies
894
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.8 years ago nmchavez • 0
0
votes
0
replies
795
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.8 years ago nmchavez • 0
0
votes
0
replies
739
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.0 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.1k
views
Difference in output of logicle transform in different languages
flowCore
updated 2.8 years ago by • 0 • written 3.1 years ago by ▴ 20
0
votes
0
replies
864
views
Job: Bioconductor developer
FlowCytometry flowCore
3.1 years ago markkelly1983 ▴ 20
0
votes
1
reply
832
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.2 years ago • updated 3.1 years ago Rainer • 0
0
votes
1
reply
1.1k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.3 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
1
reply
1.8k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.3 years ago by ★ 1.3k • written 3.6 years ago by • 0
0
votes
1
reply
1.5k
views
Re-naming $PnS parameters
flowCore
updated 3.8 years ago by ▴ 360 • written 3.8 years ago by • 0
2
votes
3
replies
1.3k
views
Getting number of datasets with flowCore
flowCore
updated 3.8 years ago by ▴ 360 • written 3.8 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by • 0
0
votes
0
replies
813
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.1 years ago GFM ▴ 20
1
vote
6
replies
1.7k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by • 0
0
votes
8
replies
2.1k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 15 months ago by • 0 • written 4.2 years ago by ▴ 30
3
votes
10
replies
2.9k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.6 years ago by ▴ 360 • written 4.6 years ago by ▴ 30
0
votes
1
reply
881
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.6 years ago by ▴ 310 • written 4.8 years ago by • 0
2
votes
2
replies
1.9k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by ▴ 30
4
votes
5
replies
1.5k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by • 0
0
votes
0
replies
747
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.8 years ago palffy.karoly • 0
0
votes
2
replies
1.2k
views
flowCore not displaying FL gates
flowCore
updated 4.9 years ago by ★ 1.3k • written 4.9 years ago by • 0
2
votes
4
replies
1.4k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.0 years ago chandra.swarnendu • 0
0
votes
1
reply
2.1k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by ▴ 10
1
vote
3
replies
1.5k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.3 years ago cahyasu88 • 0
1
vote
0
replies
1.1k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.4 years ago nina.hahn • 0
3
votes
2
replies
1.2k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.4 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.3k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.4 years ago rdlr • 0
0
votes
1
reply
911
views
Issue creating transformed filter in flowCore
flowCore
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
4
votes
4
replies
1.6k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 90
3
votes
1
reply
2.4k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
2
votes
3
replies
2.1k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
1
vote
4
replies
2.0k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ▴ 70
0
votes
0
replies
894
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.7 years ago kovacik • 0
1
vote
5
replies
2.1k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.8 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 10
1
vote
6
replies
2.7k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.8 years ago by ▴ 360 • written 5.8 years ago by • 0
50 results • Page 1 of 1
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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