Showing : FlowCore • reset
0
votes
0
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315
views
How to fix fix $PnR in flowCore
flowCore
updated 5 months ago by 67k • written 5 months ago by • 0
1
vote
1
reply
526
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 8 months ago by ▴ 350 • written 9 months ago by ▴ 30
0
votes
0
replies
489
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
10 months ago info ▴ 10
0
votes
6
replies
1.5k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 11 months ago by ▴ 350 • written 11 months ago by • 0
1
vote
1
reply
594
views
How to read fcs3.2 files
flowCore
updated 11 months ago by 67k • written 11 months ago by ▴ 10
0
votes
2
replies
654
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
12 months ago mrescan • 0
0
votes
0
replies
578
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
16 months ago aguirre ▴ 20
0
votes
2
replies
719
views
Unable to access Git links.
Source flowCore Repository git
updated 19 months ago by 4.1k • written 19 months ago by • 0
0
votes
0
replies
570
views
Merging 2 staining panels
FlowCytometry flowCore
21 months ago michaela.gregorova13 • 0
0
votes
0
replies
710
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
21 months ago pawel.malecki • 0
2
votes
1
reply
1.2k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.0 years ago aguirre ▴ 20
0
votes
0
replies
708
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.0 years ago Dennis.hinkel • 0
2
votes
9
replies
2.1k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.2 years ago by ▴ 350 • written 2.2 years ago by • 0
0
votes
0
replies
964
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.6 years ago hamiltond ▴ 10
0
votes
0
replies
1.3k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.7 years ago hamiltond ▴ 10
0
votes
0
replies
881
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.7 years ago nmchavez • 0
0
votes
0
replies
776
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.7 years ago nmchavez • 0
0
votes
0
replies
717
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.9 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.1k
views
Difference in output of logicle transform in different languages
flowCore
updated 2.7 years ago by • 0 • written 3.0 years ago by ▴ 20
0
votes
0
replies
853
views
Job: Bioconductor developer
FlowCytometry flowCore
3.0 years ago markkelly1983 ▴ 20
0
votes
1
reply
814
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.1 years ago Rainer • 0
0
votes
1
reply
1.1k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.2 years ago by ★ 1.3k • written 3.6 years ago by • 0
0
votes
1
reply
1.8k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.2 years ago by ★ 1.3k • written 3.6 years ago by • 0
0
votes
1
reply
1.4k
views
Re-naming $PnS parameters
flowCore
updated 3.7 years ago by ▴ 350 • written 3.7 years ago by • 0
2
votes
3
replies
1.2k
views
Getting number of datasets with flowCore
flowCore
updated 3.7 years ago by ▴ 350 • written 3.7 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.8 years ago by ▴ 350 • written 3.8 years ago by • 0
0
votes
0
replies
795
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.0 years ago GFM ▴ 20
1
vote
6
replies
1.6k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.0 years ago by ▴ 350 • written 4.0 years ago by • 0
0
votes
8
replies
2.1k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 14 months ago by • 0 • written 4.1 years ago by ▴ 30
3
votes
10
replies
2.9k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.5 years ago by ▴ 350 • written 4.6 years ago by ▴ 30
0
votes
1
reply
860
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.6 years ago by ▴ 310 • written 4.7 years ago by • 0
2
votes
2
replies
1.9k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.6 years ago by ▴ 310 • written 4.6 years ago by ▴ 30
4
votes
5
replies
1.4k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.6 years ago by ▴ 310 • written 4.6 years ago by • 0
0
votes
0
replies
729
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.7 years ago palffy.karoly • 0
0
votes
2
replies
1.1k
views
flowCore not displaying FL gates
flowCore
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by • 0
2
votes
4
replies
1.4k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.0 years ago chandra.swarnendu • 0
0
votes
1
reply
2.1k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by ▴ 10
1
vote
3
replies
1.4k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.2 years ago cahyasu88 • 0
1
vote
0
replies
1.0k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.3 years ago nina.hahn • 0
3
votes
2
replies
1.2k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.3 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.2k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.3 years ago rdlr • 0
0
votes
1
reply
895
views
Issue creating transformed filter in flowCore
flowCore
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by • 0
4
votes
4
replies
1.6k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by ▴ 90
3
votes
1
reply
2.3k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by • 0
2
votes
3
replies
2.0k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
1
vote
4
replies
2.0k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 70
0
votes
0
replies
880
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.6 years ago kovacik • 0
1
vote
5
replies
2.0k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.7 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.1k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by ▴ 10
1
vote
6
replies
2.6k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.7 years ago by ▴ 350 • written 5.7 years ago by • 0
50 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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