Showing : FlowCore • reset
0
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98
views
How to fix fix $PnR in flowCore
flowCore
updated 13 days ago by 66k • written 14 days ago by • 0
1
vote
1
reply
311
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 11 weeks ago by ▴ 350 • written 4 months ago by ▴ 30
0
votes
0
replies
284
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
5 months ago info ▴ 10
0
votes
6
replies
1.0k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 6 months ago by ▴ 350 • written 6 months ago by • 0
1
vote
1
reply
430
views
How to read fcs3.2 files
flowCore
updated 6 months ago by 66k • written 6 months ago by ▴ 10
0
votes
2
replies
468
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
7 months ago mrescan • 0
0
votes
0
replies
432
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
11 months ago aguirre ▴ 20
0
votes
2
replies
538
views
Unable to access Git links.
Source flowCore Repository git
updated 13 months ago by 3.9k • written 13 months ago by • 0
0
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0
replies
413
views
Merging 2 staining panels
FlowCytometry flowCore
15 months ago michaela.gregorova13 • 0
0
votes
0
replies
534
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
16 months ago pawel.malecki • 0
2
votes
1
reply
964
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
19 months ago aguirre ▴ 20
0
votes
0
replies
582
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
19 months ago Dennis.hinkel • 0
2
votes
9
replies
1.6k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 21 months ago by ▴ 350 • written 21 months ago by • 0
0
votes
0
replies
784
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.2 years ago hamiltond ▴ 10
0
votes
0
replies
966
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.2 years ago hamiltond ▴ 10
0
votes
0
replies
756
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.2 years ago nmchavez • 0
0
votes
0
replies
634
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.2 years ago nmchavez • 0
0
votes
0
replies
581
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.5 years ago markkelly1983 ▴ 20
2
votes
1
reply
899
views
Difference in output of logicle transform in different languages
flowCore
updated 2.2 years ago by • 0 • written 2.5 years ago by ▴ 20
0
votes
0
replies
725
views
Job: Bioconductor developer
FlowCytometry flowCore
2.5 years ago markkelly1983 ▴ 20
0
votes
1
reply
716
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
2.6 years ago Rainer • 0
0
votes
1
reply
923
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 2.7 years ago by ★ 1.3k • written 3.1 years ago by • 0
0
votes
1
reply
1.6k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 2.7 years ago by ★ 1.3k • written 3.1 years ago by • 0
0
votes
1
reply
1.2k
views
Re-naming $PnS parameters
flowCore
updated 3.3 years ago by ▴ 350 • written 3.3 years ago by • 0
2
votes
3
replies
1.0k
views
Getting number of datasets with flowCore
flowCore
updated 3.3 years ago by ▴ 350 • written 3.3 years ago by ▴ 10
1
vote
1
reply
1.4k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.4 years ago by ▴ 350 • written 3.4 years ago by • 0
0
votes
0
replies
684
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
3.6 years ago GFM ▴ 20
1
vote
6
replies
1.4k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 3.6 years ago by ▴ 350 • written 3.6 years ago by • 0
0
votes
8
replies
1.8k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 9 months ago by • 0 • written 3.7 years ago by ▴ 30
3
votes
10
replies
2.4k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.1 years ago by ▴ 350 • written 4.1 years ago by ▴ 30
0
votes
1
reply
716
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.1 years ago by ▴ 310 • written 4.2 years ago by • 0
2
votes
2
replies
1.6k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by ▴ 30
4
votes
5
replies
1.2k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.2 years ago by ▴ 310 • written 4.2 years ago by • 0
0
votes
0
replies
610
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.3 years ago palffy.karoly • 0
0
votes
2
replies
976
views
flowCore not displaying FL gates
flowCore
updated 4.4 years ago by ★ 1.3k • written 4.4 years ago by • 0
2
votes
4
replies
1.2k
views
Mathematical operations in FCS file
flowCore flow cytometry
4.5 years ago chandra.swarnendu • 0
0
votes
1
reply
1.8k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 4.6 years ago by ★ 1.3k • written 4.6 years ago by ▴ 10
1
vote
3
replies
1.3k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
4.8 years ago cahyasu88 • 0
1
vote
0
replies
894
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
4.9 years ago nina.hahn • 0
3
votes
2
replies
1.1k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
4.9 years ago Brent.OCarrigan • 0
1
vote
2
replies
1.9k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
4.9 years ago rdlr • 0
0
votes
1
reply
771
views
Issue creating transformed filter in flowCore
flowCore
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by • 0
4
votes
4
replies
1.4k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by ▴ 80
3
votes
1
reply
2.1k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by • 0
2
votes
3
replies
1.8k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by • 0
1
vote
4
replies
1.7k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.1 years ago by ▴ 310 • written 5.1 years ago by ▴ 70
0
votes
0
replies
762
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.2 years ago kovacik • 0
1
vote
5
replies
1.8k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.3 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1000
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by ▴ 10
1
vote
6
replies
2.3k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.3 years ago by ▴ 350 • written 5.3 years ago by • 0
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Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
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Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
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