Showing : FlowCore • reset
1
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5
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2.5k
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Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
6.6 years ago carlos.x.martinez-fleites • 0
1
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2
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1.4k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by ▴ 10
1
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6
replies
3.1k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 6.7 years ago by ▴ 360 • written 6.7 years ago by • 0
2
votes
5
replies
1.8k
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 6.7 years ago by ▴ 310 • written 6.7 years ago by • 0
0
votes
1
reply
1.5k
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
6.7 years ago j.krop • 0
1
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1
reply
1.8k
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
6.8 years ago lloyd.izard ▴ 80
0
votes
1
reply
1.7k
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 6.8 years ago by 0 • written 7.0 years ago by • 0
0
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2
replies
1.5k
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by • 0
3
votes
3
replies
2.4k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 7.1 years ago by ★ 1.3k • written 8.1 years ago by ▴ 10
1
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2
replies
1.4k
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
7.2 years ago yulia.chupalova • 0
3
votes
3
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4.5k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
7.2 years ago vonskopnik ▴ 10
1
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6
replies
1.8k
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 10
0
votes
1
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1.5k
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 7.2 years ago by ★ 1.3k • written 7.2 years ago by • 0
0
votes
2
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1.2k
views
Loading Flow Files
flowcore list.files
7.2 years ago nicolette.sipperly • 0
0
votes
1
reply
1.2k
views
flowCore parameters( ) function does not appear to exist
flowcore
7.3 years ago neilruthen • 0
1
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3
replies
6.0k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
7.4 years ago Bayram Sarilmaz • 0
0
votes
2
replies
2.2k
views
Beginner & HowTo-flowCore-Example
flowcore
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
2
votes
5
replies
2.5k
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
7.5 years ago vinko.tosevski • 0
2
votes
4
replies
2.0k
views
trouble showing a polygon gate using geom_gate
flowcore ggcyto
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 10
0
votes
3
replies
2.2k
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
7.7 years ago Samuel Ahuno • 0
2
votes
4
replies
4.1k
views
Exporting FCS from FlowJo for flowCore & cytofkit analysis
flowcore flow cytometry cytofkit
updated 7.7 years ago by ▴ 360 • written 7.7 years ago by ▴ 10
1
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2
replies
1.9k
views
How do you re-order .fcs files in a flowSet?
flowcore flowset bioconductor flow cytometry fcs file
7.7 years ago Samuel Ahuno • 0
0
votes
6
replies
2.8k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 7.7 years ago by • 0 • written 9.7 years ago by • 0
0
votes
1
reply
1.3k
views
spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
7.8 years ago Samuel Ahuno • 0
0
votes
1
reply
1.5k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
2
votes
12
replies
16k
views
Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
flowcore spillover
updated 7.9 years ago by ★ 1.3k • written 7.9 years ago by ▴ 20
1
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2
replies
1.8k
views
flowCore estimate logicle - error in getChannelMarker
flowcore flow cytometry transformation
updated 7.9 years ago by ▴ 360 • written 7.9 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Loop for mass analyses and extraction of FCS data
Exprs Lapply FCS for loop flowcore
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
1
vote
3
replies
2.0k
views
Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry flowcore spillover compensation matrix
updated 8.1 years ago by ▴ 360 • written 8.1 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Error executing flowcore vignette
flowcore vignette software error
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by ▴ 70
1
vote
1
reply
1.5k
views
Using inverse logicle in flowCore
flowCore logicle transformation flow cytometry
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Error when reading the fcv file
flowcore
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by ▴ 20
0
votes
5
replies
2.2k
views
FlowCore/FlowViz: How do I skip plotting of empty populations that would otherwise cause an error?
flowcore flowviz R bioconductor flowstats
updated 8.3 years ago by ▴ 360 • written 8.4 years ago by • 0
0
votes
2
replies
1.8k
views
Subsetting clusters in flowPeaks
flowCore flowViz flowPeaks flowCore flowViz flowPeaks
updated 8.4 years ago by • 0 • written 11.3 years ago by ▴ 30
2
votes
2
replies
1.7k
views
FlowCore: How to write edited flowSet
flowcore
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by • 0
7
votes
11
replies
17k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 50
0
votes
0
replies
1.1k
views
qaProcess.timeline in flowQ won't accept filepath with spaces
flowQ qaProcess.timeline flowcore
8.6 years ago hefin_8 • 0
1
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2
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2.0k
views
flowCore: 'truncate_max_range' argument in 'read.flowSet'
flowcore
8.6 years ago Lukas Weber • 0
0
votes
2
replies
1.6k
views
flowCore compilatiopn issue with c++ library conflicting declarations
flowcore c++
8.7 years ago junk.yvert • 0
2
votes
5
replies
2.7k
views
Workflow highthroughputassays can't install properly
workflows flowcore flowstats flowworkspace
8.7 years ago kristoffer.haurum • 0
0
votes
5
replies
1.5k
views
write.flowSet new filenames bug
flowcore write.flowset()
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by • 0
0
votes
4
replies
2.2k
views
Complex filters in flowCore and ggcyto
flowCore ggcyto
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by • 0
0
votes
1
reply
2.5k
views
Exporting FCS files from GatingSet
flowcore opencyto gating flowset
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by • 0
3
votes
0
replies
2.1k
views
An appeal to flow cytometry tools users
flow flowcore flowworkspace cytometry gating
8.8 years ago Greg Finak ▴ 240
0
votes
1
reply
1.4k
views
exporting bi-exponetially transformed data as CVS
flowWorkspace flowcore
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Subsetting and Transforming
subsetting gate flowcore
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
2
votes
5
replies
2.2k
views
FlowViz plot gate (node) Names together with statistics
bioconductor flowcore flowviz flowstats
8.9 years ago y.klaver • 0
0
votes
3
replies
2.0k
views
flowCore install issues
flowcore package installation compilation error
9.0 years ago zimon.toutoune • 0
0
votes
6
replies
2.2k
views
Error biexponential transform flowTrans
flowtrans flow cytometry flowcore
updated 9.1 years ago by ★ 1.3k • written 9.1 years ago by • 0
0
votes
10
replies
2.9k
views
Ability to use a particular package via Docker
Docker flowcore dockerfile
9.1 years ago jordan.xanthopoulos • 0
211 results • Page 2 of 5
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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