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FlowCore
•
reset
0
votes
1
reply
1.5k
views
multiple errors in flowSOM- with readinput and metaClustering_consensus
flowcore
flowsom
9.4 years ago
jeremyeadler
• 0
0
votes
4
replies
2.4k
views
flowCore question regarding to the data range
flowcore
flow cytometry
updated 9.4 years ago by
joachim.schumann
• 0 • written 9.5 years ago by
Jiang, Mike
★ 1.3k
2
votes
1
reply
7.1k
views
How to edit parameters and description of fcs file
flowcore
updated 9.5 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
crysis405
▴ 10
0
votes
1
reply
1.7k
views
error flowtrans cytof flowFrame
flowtrans
flowcore
updated 9.5 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
niklaus.hurlimann
• 0
1
vote
2
replies
1.8k
views
Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls. - Spillover-flowcore
spillover
compensation
flowcore
9.7 years ago • updated 9.5 years ago
davide.franchina
▴ 10
1
vote
3
replies
2.4k
views
flowViz and grid
flowcore
flowviz
flow cytometry
updated 9.5 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
Robert Baer
▴ 70
0
votes
1
reply
2.1k
views
Sampling from a flowSet to a flowFrame
bioconductor
flowcore
sample
updated 9.5 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
cherryzt
• 0
3
votes
1
reply
1.5k
views
parsing flowFrame@description in flowCore
FCS file
flowcore
@description
updated 9.7 years ago by
Jiang, Mike
★ 1.3k • written 9.7 years ago by
Robert Baer
▴ 70
0
votes
1
reply
1.4k
views
flowCore: specify polygon coordinates
polygon gate
flowcore
flowviz
updated 9.7 years ago by
shepherl
4.3k • written 9.7 years ago by
Wilson Yeo
• 0
0
votes
1
reply
3.0k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 9.7 years ago by
Jiang, Mike
★ 1.3k • written 9.7 years ago by
anara92
• 0
1
vote
1
reply
1.5k
views
OpenCyto -- time gate and border events
opencyto gating
flowcore
flow cytometry
updated 9.7 years ago by
Jiang, Mike
★ 1.3k • written 9.7 years ago by
Ulrik Stervbo
▴ 30
1
vote
6
replies
3.8k
views
Errors in creating a flowSet from fcs files
flowcore
flowstats
flow cytometry
read.flowset()
updated 9.7 years ago by
Jiang, Mike
★ 1.3k • written 9.7 years ago by
mbxtp1
• 0
0
votes
0
replies
2.1k
views
Creating a flowSet
flowcore
flow cytometry
flowstats
read.flowset()
9.7 years ago
mbxtp1
• 0
0
votes
2
replies
2.7k
views
Scaling fcs files with flowCore
flowCore
flowcytometry
9.8 years ago
Jiang, Mike
★ 1.3k
6
votes
3
replies
4.1k
views
How to transform cytometry data from CSV and not FCS file?
flowcore
transform
data.frame
updated 9.8 years ago by
Jiang, Mike
★ 1.3k • written 9.8 years ago by
Julia
▴ 20
0
votes
1
reply
2.4k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
9.9 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.9k
views
read.flowSet error Error: vector::_M_range_check
software error
read.flowset()
read.fcs
flowcore
flowcytometry
9.9 years ago
e.bestion
• 0
2
votes
2
replies
2.2k
views
ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
flowcore
ggcyto
updated 9.9 years ago by
Jiang, Mike
★ 1.3k • written 10.0 years ago by
OT
• 0
1
vote
6
replies
2.4k
views
Trouble compiling flowCore v1.36.7 on RHEL 6.7
flowcore
10.0 years ago
Brian D. Peyser PhD
▴ 70
2
votes
2
replies
2.2k
views
How to FlowCore
flowcore
flow cytometry
updated 10.1 years ago by
Jiang, Mike
★ 1.3k • written 10.1 years ago by
magomudw
• 0
0
votes
4
replies
2.2k
views
Setting of default range parameter value when writing FCS files using write.FCS
flowCore
10.1 years ago
Robert Bruggner
▴ 10
1
vote
1
reply
2.0k
views
Understanding Flow cytometry data
flow cytometry
flowcore
flowclean
rflowcyt
flowworkspace
updated 10.1 years ago by
Jiang, Mike
★ 1.3k • written 10.1 years ago by
magomudw
• 0
0
votes
8
replies
3.0k
views
unable to read FCS: expecting the bitwidth to be the same for all parameters
flowcore
read.fcs
10.4 years ago • updated 10.2 years ago
michael.gaspar
• 0
0
votes
2
replies
1.2k
views
error in reading fcs
flowCore
10.2 years ago
yang.chen
• 0
1
vote
2
replies
1.8k
views
read.FCS error on FCS import
flowcore
10.2 years ago
Kipper Fletez-Brant
▴ 150
0
votes
1
reply
2.1k
views
Plotting flow cytometry data
flowviz
flowcore
updated 10.2 years ago by
Jiang, Mike
★ 1.3k • written 10.2 years ago by
gori73
• 0
0
votes
5
replies
4.1k
views
[FlowCore] How can I add two different flowFrames to the same flowSet?
flowcore
updated 10.2 years ago by
Jiang, Mike
★ 1.3k • written 10.2 years ago by
Thomas67
• 0
0
votes
3
replies
1.9k
views
Displaying Negative data from flow cytometers
flowcore
flowworkspace
flowviz
updated 10.3 years ago by
Jiang, Mike
★ 1.3k • written 10.3 years ago by
arnaud.colantonio
• 0
2
votes
8
replies
3.6k
views
read.FCS fails on BioRad FCS files
flowCore
10.3 years ago
Robert Baer
▴ 70
0
votes
1
reply
1.8k
views
Inconsistent Subseting using norm2Filter in FlowCore
flowcore
gate
subsetting
filter
updated 10.3 years ago by
Jiang, Mike
★ 1.3k • written 10.3 years ago by
peterfoster
▴ 20
1
vote
0
replies
1.2k
views
Is there a concat function?
flowcore
10.4 years ago
Jiang, Mike
★ 1.3k
1
vote
2
replies
3.2k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 10.4 years ago by
Jiang, Mike
★ 1.3k • written 10.4 years ago by
clevy
▴ 10
0
votes
1
reply
1.7k
views
samples are reordered in read.flowSet
flowcore
flowcytometry
10.5 years ago • updated 10.4 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.8k
views
densityplot in flowViz
flowviz
flowcore
10.5 years ago
Jiang, Mike
★ 1.3k
1
vote
0
replies
1.6k
views
writing out FCS files then reading them back in
flowcore
flow cytometry
10.5 years ago
Jiang, Mike
★ 1.3k
3
votes
3
replies
3.2k
views
flowcore: z-Score normalization of flowSet (fsApply or normalize)
flowcore
fcs
normalization
flowstats
updated 10.5 years ago by
Jiang, Mike
★ 1.3k • written 10.5 years ago by
BenAbflack
• 0
0
votes
2
replies
2.5k
views
xyplot can't find channel (flowViz)
flowcore
flowviz
flowcytometry
updated 10.5 years ago by
Jiang, Mike
★ 1.3k • written 10.5 years ago by
ericjkort
• 0
0
votes
10
replies
3.7k
views
flowCore --problem with read.FCS()
flowcore
updated 10.5 years ago by
Jiang, Mike
★ 1.3k • written 10.6 years ago by
mandycm26
• 0
0
votes
2
replies
2.1k
views
FlowCore and FlowTrack installation and running problems
flowcore
flowtrack
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
angela.oliveira.pisco
• 0
0
votes
0
replies
1.4k
views
readFCS truncates the data that is out of instrument range
flowcore
flow cytometry
10.6 years ago
Jiang, Mike
★ 1.3k
0
votes
2
replies
1.1k
views
help with read.FCS clipping data
flowcore
updated 10.7 years ago by
Jiang, Mike
★ 1.3k • written 10.7 years ago by
where_is_the_mustard
• 0
3
votes
2
replies
2.3k
views
How are autofluorescence values used in the spillover/compensate functions?
flowcore
flow cytometry
compensation
spillover
updated 10.8 years ago by
Greg Finak
▴ 150 • written 10.8 years ago by
peterfoster
▴ 20
2
votes
2
replies
1.5k
views
timeLinePlot() ylab parameter doesn't work?
flowviz
flowcore
updated 10.9 years ago by
Jiang, Mike
★ 1.3k • written 10.9 years ago by
pavitrarc
▴ 20
0
votes
1
reply
1.4k
views
flowCore - read.FCSHeader
flowcore
10.9 years ago
Jiang, Mike
★ 1.3k
2
votes
3
replies
3.5k
views
read.flowSet fails but read.FCS works
flowCore
11.0 years ago
pavitrarc
▴ 20
1
vote
1
reply
2.0k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore
read.FCS
flowcytometry
updated 11.0 years ago by
Jiang, Mike
★ 1.3k • written 11.2 years ago by
skiaphrene
▴ 10
1
vote
3
replies
3.0k
views
Load csf files with read.flowSet()
read.flowSet()
flowcore
11.1 years ago
marongiu.luigi
• 0
1
vote
2
replies
2.6k
views
data() doesn't work for fcs files?
flowCore
flowjo
data
updated 11.1 years ago by
Greg Finak
▴ 150 • written 11.2 years ago by
AJC
▴ 10
1
vote
0
replies
1.5k
views
flowFit channel name needs to match keyword value in order for parentFitting to work?
flowFit
parentFitting(x
channel
flowcore
flowCore
11.3 years ago
erickttr
• 0
4
votes
1
reply
2.2k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
11.3 years ago
Greg Finak
▴ 150
211 results • Page
3 of 5
Recent ...
Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Luca
• 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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Lluís Revilla Sancho
▴ 760
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Gordon Smyth
53k
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Aleena_Ensembl
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