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GViz
•
reset
0
votes
1
reply
1.3k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
updated 15 days ago by
ming
• 0 • written 3.1 years ago by
Ahdee
▴ 50
0
votes
0
replies
186
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
3 months ago
Marco
• 0
0
votes
3
replies
1.4k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 5 months ago by
Maryna
• 0 • written 16 months ago by
Michael
• 0
0
votes
3
replies
486
views
Gviz and custom database
Gviz
updated 7 months ago by
James W. MacDonald
67k • written 7 months ago by
luigi.faino
• 0
1
vote
2
replies
1.7k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 8 months ago by
Tim Peters
▴ 200 • written 22 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
440
views
GC content track on GVIZ
Gviz
updated 11 months ago by
James W. MacDonald
67k • written 11 months ago by
ilaria.maurizio
• 0
1
vote
3
replies
2.0k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 14 months ago by
Robert Ivanek
▴ 750 • written 3.7 years ago by
ltzhou
• 0
0
votes
0
replies
598
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
14 months ago
dbsgtk
• 0
1
vote
0
replies
770
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
14 months ago
yujin
▴ 10
1
vote
3
replies
878
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 14 months ago by
Hervé Pagès
16k • written 14 months ago by
yujin
▴ 10
0
votes
5
replies
2.3k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
2.1 years ago • updated 15 months ago
Daniel E. Weeks
▴ 30
0
votes
2
replies
750
views
how to add annotation on individual track
Gviz
updated 20 months ago by
Robert Ivanek
▴ 750 • written 20 months ago by
xiaofeiwang18266
▴ 50
0
votes
0
replies
579
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
22 months ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
912
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
23 months ago
gilliangoobie
• 0
0
votes
2
replies
1.6k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi
Gviz
updated 2.5 years ago by
James W. MacDonald
67k • written 2.5 years ago by
anikajohn
• 0
0
votes
1
reply
1.3k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.5 years ago
rohitsatyam102
▴ 20
4
votes
1
reply
2.0k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.6 years ago by
James W. MacDonald
67k • written 2.6 years ago by
hsf378
• 0
1
vote
3
replies
2.4k
views
GVIZ giving error with loading hg38 genome
R
Gviz
2.7 years ago
RUser743
• 0
1
vote
2
replies
1.8k
views
Gviz and datatracks
Gviz
updated 2.9 years ago by
corinne_hutfilz
• 0 • written 3.0 years ago by
Bogdan
▴ 670
0
votes
0
replies
707
views
Color of 2nd exon
GViz
3.0 years ago
underscore
• 0
1
vote
1
reply
1.1k
views
Gviz DataTrack data transformation on the fly
aggregation
Gviz
DataTrack
updated 3.0 years ago by
Robert Ivanek
▴ 750 • written 3.0 years ago by
Robert
▴ 10
0
votes
0
replies
823
views
Modify y axis or add second y axis in Gviz
OverlayTrack
Gviz
3.0 years ago
Robert
▴ 10
4
votes
4
replies
2.7k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 3.1 years ago by
Pariksheet Nanda
▴ 120 • written 6.3 years ago by
wsciekly.maciek
▴ 10
0
votes
0
replies
730
views
Y axis Data Track GVIZ
GVIZ
3.2 years ago • updated 3.1 years ago
rbenel
▴ 40
1
vote
1
reply
1.8k
views
GVIZ on R not loading mm10 from UCSC
Gviz
3.3 years ago
RUser743
• 0
0
votes
3
replies
1.2k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
3.3 years ago
Hartorthereal
• 0
1
vote
3
replies
1.6k
views
Gradient dotplot
Gviz
3.3 years ago
sophieagger
• 0
0
votes
0
replies
1.0k
views
One read per line and other ordering of reads in Gviz
Gviz
3.4 years ago
pillailab1
• 0
0
votes
4
replies
1.5k
views
window parameter in DataTrack function with a single sample
Gviz
3.4 years ago • updated 3.2 years ago
rbenel
▴ 40
0
votes
1
reply
1.3k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 3.4 years ago by
James W. MacDonald
67k • written 3.4 years ago by
mar.pieraccioli
▴ 10
0
votes
4
replies
1.6k
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
updated 24 months ago by
James W. MacDonald
67k • written 3.5 years ago by
karlaarz
• 0
1
vote
3
replies
1.4k
views
Can't produce a generegiontrack from my txdb anymore
gviz
GenomicFeatures
3.5 years ago
A.J.
▴ 20
0
votes
0
replies
1.1k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.7 years ago
gdeniz
• 0
0
votes
0
replies
948
views
Gviz - Fixed width of title panel on left
Gviz
3.7 years ago
rheery
• 0
0
votes
0
replies
845
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
3.8 years ago
ginlucks
• 0
0
votes
3
replies
1.2k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.8 years ago by
James W. MacDonald
67k • written 3.8 years ago by
svenbioinf
• 0
0
votes
0
replies
1.2k
views
Gviz import lor reads from bam file
Gviz
longreads
3.8 years ago
ginlucks
• 0
0
votes
1
reply
928
views
two tracks have the same axis
plot
Gviz
4.2 years ago
腾
• 0
0
votes
2
replies
1.2k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
4.2 years ago
Vaibhav
• 0
0
votes
2
replies
1.3k
views
Gviz vertical text labels
Gviz
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
Jake
▴ 90
0
votes
1
reply
1.1k
views
Gviz, keeping strand information while zooming in
Gviz
strand
4.3 years ago
svenbioinf
• 0
2
votes
2
replies
1.5k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 4.4 years ago by
James W. MacDonald
67k • written 4.4 years ago by
paul.jaschke
▴ 10
0
votes
1
reply
1.2k
views
Gviz package for plotting DMRs
Gviz
DMRs
updated 4.5 years ago by
Robert Ivanek
▴ 750 • written 4.5 years ago by
ayeshatariq78
• 0
0
votes
3
replies
2.6k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.5 years ago
roman.hillje
• 0
1
vote
3
replies
1.0k
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
peris_baba
• 0
0
votes
2
replies
1.2k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.7 years ago by
Robert Ivanek
▴ 750 • written 4.7 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.3k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 4.9 years ago by
Robert Ivanek
▴ 750 • written 4.9 years ago by
syliang
• 0
0
votes
4
replies
1.4k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions
gviz
updated 4.9 years ago by
liz.ingsimmons
▴ 140 • written 4.9 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.1k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.9 years ago by
Robert Ivanek
▴ 750 • written 5.5 years ago by
Robert
▴ 10
1
vote
5
replies
1.3k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.9 years ago by
James W. MacDonald
67k • written 4.9 years ago by
sinha.puja
▴ 10
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Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish
by
brown.annaleigh
• 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal
by
iqratechnology4
• 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
by
James W. MacDonald
67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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