Bioconductor P-Value

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943

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outputresult DEqMS sca.adj.pval error p-value

3.2 years ago Bastian • 0

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1.5k

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by nash12 • 0

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5.6k

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gwas genesis p-value q-q-plot

updated 4.9 years ago by Anna • 0 • written 6.0 years ago by solanum • 0

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3.0k

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p-value FDR DEP

updated 4.5 years ago by António Miguel de Jesus Domingues ▴ 510 • written 5.0 years ago by Alexei Leliavski ▴ 60

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2.4k

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statistical significance p-value q-value FDR qvalue

5.9 years ago manozawa ▴ 10

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1.5k

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ihw p-value multiple hypothesis

updated 6.5 years ago by Wolfgang Huber ★ 13k • written 6.5 years ago by xiaotong.yao23 ▴ 10

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2.1k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by ilovesuperheroes1993 • 0

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2.4k

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deseq2 p-value continuous deseq

6.8 years ago ariel ▴ 20

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2.6k

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DESeq2 nbinomWaldTest one-sided p-value

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by t.kuilman ▴ 170

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1.4k

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weighted correlation network analysis WGCNA P-Value

7.3 years ago modarzi ▴ 10

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14k

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FDR p-value DESeq RNA-Seq

updated 8.0 years ago by Wade Davis ▴ 60 • written 8.6 years ago by yjiangnan ▴ 10

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1.3k

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Gostats p-value

8.4 years ago salamandra ▴ 20

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2.0k

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deseq2 normalization p-value metaseq

updated 8.4 years ago by Ryan C. Thompson ★ 7.9k • written 8.4 years ago by ed_isfahani • 0

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4.7k

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limma microarray fdr p-value results

updated 8.5 years ago by Aaron Lun ★ 29k • written 8.5 years ago by bhgyu ▴ 30

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2.7k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 9.5 years ago by Rory Stark ★ 5.2k • written 9.5 years ago by alisonhanh.nguyen • 0

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15k

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deseq differential gene expression statistics p-value

updated 4.8 years ago by Kai_Qi ▴ 20 • written 9.8 years ago by Giard ▴ 30

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5.7k

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p-value detection

updated 9.9 years ago by Gordon Smyth 53k • written 9.9 years ago by Eleni Christodoulou ▴ 150

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2.9k

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rankprod p-value

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by brilladine • 0

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2.8k

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p-value medips MACS

updated 10.5 years ago by Lukas Chavez ▴ 570 • written 10.5 years ago by tptacek3050 • 0

19 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k