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P-Value
•
reset
0
votes
0
replies
516
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
17 months ago
Bastian
• 0
0
votes
1
reply
906
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 2.5 years ago by
Michael Love
41k • written 2.6 years ago by
nash12
• 0
1
vote
2
replies
3.9k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.1 years ago by
Anna
• 0 • written 4.3 years ago by
solanum
• 0
7
votes
2
replies
1.9k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 2.7 years ago by
António Miguel de Jesus Domingues
▴ 490 • written 3.3 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
1.3k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
4.2 years ago
manozawa
▴ 10
1
vote
2
replies
858
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 4.8 years ago by
Wolfgang Huber
★ 13k • written 4.8 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
1.1k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
1.5k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.1 years ago
ariel
▴ 20
2
votes
2
replies
1.9k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
t.kuilman
▴ 170
0
votes
0
replies
990
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
5.6 years ago
modarzi
▴ 10
40
votes
44
replies
10k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 6.3 years ago by
Wade Davis
▴ 60 • written 6.8 years ago by
yjiangnan
▴ 10
0
votes
0
replies
944
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
6.7 years ago
salamandra
▴ 20
5
votes
6
replies
1.4k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 6.7 years ago by
Ryan C. Thompson
★ 7.9k • written 6.7 years ago by
ed_isfahani
• 0
2
votes
5
replies
3.0k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.0k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 7.8 years ago by
Rory Stark
★ 5.1k • written 7.8 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
12k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 3.0 years ago by
Kai_Qi
▴ 20 • written 8.1 years ago by
Giard
▴ 30
11
votes
20
replies
4.1k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 8.1 years ago by
Gordon Smyth
50k • written 8.2 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
2.3k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
brilladine
• 0
1
vote
2
replies
2.2k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 8.8 years ago by
Lukas Chavez
▴ 570 • written 8.8 years ago by
tptacek3050
• 0
19 results • Page
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Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Comment: Error in ImportRData
by
ulna
• 0
[@alastair.fortune][1][gorilla tag][2] The most recent version of IsoformSwitchAnalyzeR available on Github (v. 2.01.13) allowed me to reso…
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
ulna
• 0
[@ilayahari][1][basketball stars][2] The complete version of GEOmetadb cannot be downloaded, even though the demo file works. [1]: http…
Votes
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
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