Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
P-Value
•
reset
0
votes
0
replies
970
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
3.3 years ago
Bastian
• 0
0
votes
1
reply
1.5k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
nash12
• 0
1
vote
2
replies
5.8k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 5.0 years ago by
Anna
• 0 • written 6.2 years ago by
solanum
• 0
7
votes
2
replies
3.2k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 4.6 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 5.2 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
2.6k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
6.1 years ago
manozawa
▴ 10
1
vote
2
replies
1.5k
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 6.7 years ago by
Wolfgang Huber
★ 13k • written 6.7 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
2.3k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
2.5k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
7.0 years ago
ariel
▴ 20
2
votes
2
replies
2.7k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.5k
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
7.5 years ago
modarzi
▴ 10
41
votes
44
replies
14k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 8.2 years ago by
Wade Davis
▴ 60 • written 8.7 years ago by
yjiangnan
▴ 10
0
votes
0
replies
1.4k
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
8.6 years ago
salamandra
▴ 20
5
votes
6
replies
2.1k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
ed_isfahani
• 0
2
votes
5
replies
4.9k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.7k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 9.7 years ago by
Rory Stark
★ 5.3k • written 9.7 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
15k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 4.9 years ago by
Kai_Qi
▴ 20 • written 10.0 years ago by
Giard
▴ 30
11
votes
20
replies
5.8k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 10.0 years ago by
Gordon Smyth
53k • written 10.0 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
3.0k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 10.6 years ago by
James W. MacDonald
68k • written 10.6 years ago by
brilladine
• 0
1
vote
2
replies
2.8k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 10.7 years ago by
Lukas Chavez
▴ 570 • written 10.7 years ago by
tptacek3050
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: GOseq Probability Weight Function bad fit
by
a2sahaaaq2c
• 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards
• All
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.3k
Popular Question
to
Steve Lianoglou
★ 13k
Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Pakistan,
2 hours ago
USA,
3 hours ago
Traffic: 1133 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6