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P-Value
•
reset
0
votes
0
replies
975
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
3.4 years ago
Bastian
• 0
0
votes
1
reply
1.6k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
nash12
• 0
1
vote
2
replies
5.8k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 5.1 years ago by
Anna
• 0 • written 6.2 years ago by
solanum
• 0
7
votes
2
replies
3.2k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 4.7 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 5.2 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
2.7k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
6.1 years ago
manozawa
▴ 10
1
vote
2
replies
1.5k
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 6.7 years ago by
Wolfgang Huber
★ 13k • written 6.7 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
2.4k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 7.0 years ago by
Aaron Lun
★ 29k • written 7.0 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
2.5k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
7.0 years ago
ariel
▴ 20
2
votes
2
replies
2.7k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.5k
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
7.5 years ago
modarzi
▴ 10
41
votes
44
replies
15k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 8.2 years ago by
Wade Davis
▴ 60 • written 8.8 years ago by
yjiangnan
▴ 10
0
votes
0
replies
1.4k
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
8.6 years ago
salamandra
▴ 20
5
votes
6
replies
2.1k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
ed_isfahani
• 0
2
votes
5
replies
5.0k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.8k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 9.7 years ago by
Rory Stark
★ 5.3k • written 9.7 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
16k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 5.0 years ago by
Kai_Qi
▴ 20 • written 10.0 years ago by
Giard
▴ 30
11
votes
20
replies
5.8k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
3.1k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
brilladine
• 0
1
vote
2
replies
2.8k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 10.7 years ago by
Lukas Chavez
▴ 570 • written 10.7 years ago by
tptacek3050
• 0
19 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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