Bioconductor P-Value

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13k

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deseq differential gene expression statistics p-value

updated 3.2 years ago by Kai_Qi ▴ 20 • written 8.2 years ago by Giard ▴ 30

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10k

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FDR p-value DESeq RNA-Seq

updated 6.4 years ago by Wade Davis ▴ 60 • written 7.0 years ago by yjiangnan ▴ 10

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4.2k

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p-value detection

updated 8.3 years ago by Gordon Smyth 50k • written 8.3 years ago by Eleni Christodoulou ▴ 150

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4.1k

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gwas genesis p-value q-q-plot

updated 3.2 years ago by Anna • 0 • written 4.4 years ago by solanum • 0

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3.2k

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limma microarray fdr p-value results

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by bhgyu ▴ 30

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2.3k

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rankprod p-value

updated 8.9 years ago by James W. MacDonald 65k • written 8.9 years ago by brilladine • 0

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2.2k

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p-value medips MACS

updated 8.9 years ago by Lukas Chavez ▴ 570 • written 8.9 years ago by tptacek3050 • 0

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2.1k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by alisonhanh.nguyen • 0

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2.0k

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DESeq2 nbinomWaldTest one-sided p-value

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by t.kuilman ▴ 170

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2.0k

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p-value FDR DEP

updated 2.9 years ago by António Miguel de Jesus Domingues ▴ 510 • written 3.4 years ago by Alexei Leliavski ▴ 60

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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1.4k

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deseq2 normalization p-value metaseq

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by ed_isfahani • 0

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1.3k

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statistical significance p-value q-value FDR qvalue

4.3 years ago manozawa ▴ 10

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1.1k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by ilovesuperheroes1993 • 0

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1.0k

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weighted correlation network analysis WGCNA P-Value

5.7 years ago modarzi ▴ 10

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976

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Gostats p-value

6.8 years ago salamandra ▴ 20

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954

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by nash12 • 0

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909

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ihw p-value multiple hypothesis

updated 4.9 years ago by Wolfgang Huber ★ 13k • written 4.9 years ago by xiaotong.yao23 ▴ 10

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547

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outputresult DEqMS sca.adj.pval error p-value

18 months ago Bastian • 0

19 results • Page 1 of 1

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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