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News:
List of Deprecated Packages for Bioc3.8
package
deprecate
release
news
News
7.3 years ago
shepherl
4.2k
0
votes
4
replies
2.0k
views
Why SPADE package has been removed from bioconductor?
spade
release
remove
clustering
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
a.n.horvath
• 0
7
votes
4
replies
2.0k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 7.4 years ago by
Valerie Obenchain
★ 6.8k
1
vote
3
replies
1.3k
views
PureCN Release Notes
PureCN
Release
updated 7.4 years ago by
James W. MacDonald
68k • written 7.4 years ago by
twtoal
▴ 10
1
vote
1
reply
1.3k
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
7.4 years ago
shepherl
4.2k
0
votes
0
replies
1.4k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
7.4 years ago
shepherl
4.2k
0
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 7.5 years ago by
shepherl
4.2k
0
votes
0
replies
1.1k
views
News:
Ensembl 92 has been released
biomart
ensembl
release
ensembl92
News
7.4 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.2k
views
News:
Release Deadline: Passing R CMD build and R CMD check
package
build
build/check error
check
release
News
7.5 years ago
shepherl
4.2k
0
votes
0
replies
1.1k
views
News:
Bioconductor New Package Submission Deadline Today!
new submission
release
News
7.5 years ago
shepherl
4.2k
0
votes
0
replies
1.0k
views
News:
Bioconductor 3.7 release schedule
bioconductor
news
release
News
7.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages for Bioc3.7
package updates
deprecate
release
News
7.5 years ago
shepherl
4.2k
2
votes
1
reply
1.8k
views
News:
Ensembl 91 is out!
ensembl
biomart
release
ensembl91
News
7.8 years ago
amonida
▴ 20
0
votes
0
replies
1.7k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
7.9 years ago
shepherl
4.2k
5
votes
0
replies
1.2k
views
News:
Bioconductor 3.6 is released
bioconductor
news
release
News
7.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.3k
views
News:
Bioconductor 3.6 release: 3.6 branch created
bioconductor
release
News
7.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
News:
Bioconductor 3.6 release: stop commits to git.bioconductor.org
bioconductor
release
News
7.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
News:
Bioconductor 3.6 release: new package deadline
package submission
bioconductor
release
News
8.0 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.6
bioconductor
release
deprecate
News
8.0 years ago
shepherl
4.2k
0
votes
0
replies
1.0k
views
News:
Deadline for Packages and Data Bioc3.6
release
package submission
News
8.0 years ago
shepherl
4.2k
0
votes
0
replies
1.0k
views
News:
Bioconductor 3.6 release
bioconductor
news
release
News
8.0 years ago
Valerie Obenchain
★ 6.8k
1
vote
1
reply
1.5k
views
News:
Ensembl 90 has been released
ensembl
biomart
ensembl90
release
News
8.1 years ago
Thomas Maurel
▴ 800
8
votes
1
reply
3.2k
views
News:
Bioconductor 3.5 is released
bioconductor
news
release
News
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
Valerie Obenchain
★ 6.8k
3
votes
0
replies
1.4k
views
News:
Bioconductor 3.5 release
Bioconductor
release
news
News
8.5 years ago
Valerie Obenchain
★ 6.8k
6
votes
0
replies
2.2k
views
News:
Bioconductor 3.4 is released
news
announcement
release
News
8.9 years ago
Hervé Pagès
16k
3
votes
0
replies
1.3k
views
News:
Bioconductor 3.3 is released
release
announcement
News
9.4 years ago
Dan Tenenbaum
★ 8.2k
3
votes
9
replies
3.1k
views
Bioconductor docker tags and release versions
docker
release
10.3 years ago • updated 10.0 years ago
Karl Forner
▴ 70
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.1 is released!
release
News
10.4 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.9k
views
News:
Ensembl GRCh37 release 79 data update
biomart
ensembl
release
news
GRCh37
News
10.5 years ago
Thomas Maurel
▴ 800
3
votes
3
replies
1.9k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 10.5 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 10.5 years ago by
Malcolm Cook
★ 1.6k
0
votes
5
replies
2.2k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 10.5 years ago by
Dan Tenenbaum
★ 8.2k • written 10.5 years ago by
amonida
▴ 20
131 results • Page
3 of 3
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Exactly, MDS was computed on logCPM values from `cpm(x, log=TRUE)` after running `calcNormFactors(method="TMMwsp")` on the DGE object. I al…
Answer: GO.db and others package Download failure
by
James W. MacDonald
68k
You didn't get an error. You didn't even get a warning! You simply got a message saying that two (unrelated) packages were not updated. As …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
MDS of what quantity? LogCPM from `cpm()`? I don't have a definitive answer, but my feeling that is that library size effects are to be ex…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…
Answer: replace cat with message in glmTreat when lfc = 0
by
Gordon Smyth
53k
Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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