Bioconductor Shiny

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779

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shiny EBImage

2.7 years ago Wolfgang Huber ★ 13k

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1.1k

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ChAMP shiny ChAMPdata

updated 3.0 years ago by anna.stanislawska • 0 • written 3.0 years ago by Mari • 0

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BatchQC RNA-seq R Shiny batch-effect

4.9 years ago manninm • 0

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AnnotationHub Shiny Rstudio

updated 5.1 years ago by shepherl 4.1k • written 5.1 years ago by bwiley4 • 0

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iSEE shiny summarizedExperiment News

6.0 years ago Aaron Lun ★ 28k

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1.9k

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by hinkel2 • 0

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DEBrowser shiny

6.2 years ago tomasfly • 0

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1.8k

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rtracklayer browsegenome shiny

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by vivek82 • 0

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shiny package deploy

7.0 years ago lloyd.izard ▴ 80

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1.6k

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SC3 single-cell shiny

updated 7.9 years ago by Vladimir Kiselev ▴ 150 • written 7.9 years ago by cfustero ▴ 20

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1.9k

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ChAMP Epigenetics plotly Shiny GUI News

8.4 years ago • updated 8.2 years ago Yuan Tian ▴ 90

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1.4k

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shiny

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by bhakti.dwivedi • 0

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cellcode shiny heatmap

updated 8.9 years ago by Andrzej Oleś ▴ 750 • written 8.9 years ago by christopher.clarskon15 ▴ 20

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limmagui shiny

9.0 years ago christopher.clarskon15 ▴ 20

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annotation genomicranges visualization docker shiny Tutorial

9.0 years ago Vincent J. Carey, Jr. 6.7k

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R validate shiny

9.5 years ago alptaciroglu ▴ 50

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shiny network interactions

10.4 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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