Bioconductor Shiny

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923

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shiny EBImage

3.3 years ago Wolfgang Huber ★ 13k

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1.3k

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ChAMP shiny ChAMPdata

updated 3.6 years ago by anna.stanislawska • 0 • written 3.6 years ago by Mari • 0

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1.1k

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BatchQC RNA-seq R Shiny batch-effect

5.5 years ago manninm • 0

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1.3k

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AnnotationHub Shiny Rstudio

updated 5.7 years ago by shepherl 4.2k • written 5.7 years ago by bwiley4 • 0

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1.7k

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iSEE shiny summarizedExperiment News

6.6 years ago Aaron Lun ★ 29k

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2.1k

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by hinkel2 • 0

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2.5k

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DEBrowser shiny

6.8 years ago tomasfly • 0

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2.0k

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rtracklayer browsegenome shiny

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by vivek82 • 0

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6.9k

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shiny package deploy

7.6 years ago lloyd.izard ▴ 80

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1.8k

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SC3 single-cell shiny

updated 8.5 years ago by Vladimir Kiselev ▴ 150 • written 8.5 years ago by cfustero ▴ 20

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2.0k

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ChAMP Epigenetics plotly Shiny GUI News

9.0 years ago • updated 8.8 years ago Yuan Tian ▴ 90

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1.5k

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shiny

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by bhakti.dwivedi • 0

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1.7k

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cellcode shiny heatmap

updated 9.5 years ago by Andrzej Oleś ▴ 750 • written 9.5 years ago by christopher.clarskon15 ▴ 20

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2.1k

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limmagui shiny

9.6 years ago christopher.clarskon15 ▴ 20

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4.5k

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annotation genomicranges visualization docker shiny Tutorial

9.6 years ago Vincent J. Carey, Jr. 6.7k

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2.1k

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R validate shiny

10.1 years ago alptaciroglu ▴ 50

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3.4k

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shiny network interactions

11.0 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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