Bioconductor Shiny

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shiny EBImage

3.3 years ago Wolfgang Huber ★ 13k

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1.3k

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ChAMP shiny ChAMPdata

updated 3.6 years ago by anna.stanislawska • 0 • written 3.6 years ago by Mari • 0

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BatchQC RNA-seq R Shiny batch-effect

5.5 years ago manninm • 0

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AnnotationHub Shiny Rstudio

updated 5.7 years ago by shepherl 4.2k • written 5.7 years ago by bwiley4 • 0

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iSEE shiny summarizedExperiment News

6.6 years ago Aaron Lun ★ 29k

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by hinkel2 • 0

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DEBrowser shiny

6.8 years ago tomasfly • 0

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rtracklayer browsegenome shiny

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by vivek82 • 0

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shiny package deploy

7.6 years ago lloyd.izard ▴ 80

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SC3 single-cell shiny

updated 8.5 years ago by Vladimir Kiselev ▴ 150 • written 8.5 years ago by cfustero ▴ 20

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ChAMP Epigenetics plotly Shiny GUI News

9.0 years ago • updated 8.8 years ago Yuan Tian ▴ 90

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1.5k

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shiny

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by bhakti.dwivedi • 0

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cellcode shiny heatmap

updated 9.5 years ago by Andrzej Oleś ▴ 750 • written 9.5 years ago by christopher.clarskon15 ▴ 20

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limmagui shiny

9.6 years ago christopher.clarskon15 ▴ 20

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annotation genomicranges visualization docker shiny Tutorial

9.6 years ago Vincent J. Carey, Jr. 6.7k

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R validate shiny

10.1 years ago alptaciroglu ▴ 50

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shiny network interactions

11.0 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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Popular Question to Ou, Jianhong ★ 1.3k