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12
votes
3
replies
6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.1 years ago
lloyd.izard
▴ 80
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
6
votes
0
replies
1.3k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.1 years ago
Aaron Lun
★ 28k
3
votes
3
replies
1.3k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 7.0 years ago by
Vladimir Kiselev
▴ 150 • written 7.0 years ago by
cfustero
▴ 20
1
vote
7
replies
2.7k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
9.5 years ago
pshannon
▴ 100
1
vote
1
reply
1.3k
views
reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 8.0 years ago by
Andrzej Oleś
▴ 750 • written 8.0 years ago by
christopher.clarskon15
▴ 20
0
votes
1
reply
1.2k
views
R packages developed using shiny
shiny
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
bhakti.dwivedi
• 0
0
votes
1
reply
1.6k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
7.5 years ago • updated 7.3 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.6k
views
shiny account on mac not deploying server
limmagui
shiny
8.1 years ago
christopher.clarskon15
▴ 20
0
votes
3
replies
1.4k
views
browseGenome with Shiny
rtracklayer
browsegenome
shiny
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
vivek82
• 0
0
votes
1
reply
1.9k
views
DEBrowser shiny - Maximum upload size exceeded - error
DEBrowser
shiny
5.3 years ago
tomasfly
• 0
0
votes
7
replies
1.5k
views
Problems with DESeq2 'design' parameter using Shiny/rhandsontable
deseq2
shiny
design
rhandsontable
hot_to_r()
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
hinkel2
• 0
0
votes
0
replies
1.8k
views
Shiny - error messages with validate
R
validate
shiny
8.5 years ago
alptaciroglu
▴ 50
0
votes
1
reply
926
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 4.2 years ago by
shepherl
3.8k • written 4.2 years ago by
bwiley4
• 0
0
votes
0
replies
749
views
Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
4.0 years ago
manninm
• 0
0
votes
0
replies
551
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
21 months ago
Wolfgang Huber
★ 13k
0
votes
1
reply
786
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.1 years ago by
anna.stanislawska
• 0 • written 2.1 years ago by
Mari
• 0
17 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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