Bioconductor Analysis

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votes

755

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analysis R GOfuncR

updated 18 months ago by Lluís Revilla Sancho ▴ 760 • written 18 months ago by Eliza • 0

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1.7k

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non-model enrichment organisms analysis

updated 2.1 years ago by Guido Hooiveld ★ 4.1k • written 2.3 years ago by yuhang • 0

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2.4k

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Proteomics analysis

updated 2.5 years ago by jeroen.gilis ▴ 90 • written 2.5 years ago by Shakiba • 0

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replies

687

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R analysis p_values RNASeq

updated 2.9 years ago by Sean Davis 21k • written 2.9 years ago by johndavidgriner74 • 0

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1.1k

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microarray protein analysis ProteomeProfiler

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by hcnbox • 0

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2.3k

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minfi 450k EPIC analysis

updated 5.3 years ago by James W. MacDonald 67k • written 5.3 years ago by maduran • 0

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988

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ddCt import analysis R qRTPCR

updated 5.4 years ago by Zhang, Jitao David ▴ 120 • written 5.4 years ago by mohammedtoufiq91 ▴ 10

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1.0k

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genomics analysis bioinformatics Job

5.6 years ago jmaanaki • 0

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1.6k

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agilent microarrays microrna analysis

7.4 years ago • updated 7.3 years ago arisarkar88 ▴ 40

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1.0k

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microarray analysis

7.6 years ago arisarkar88 ▴ 40

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2.1k

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mta10 affy analysis

8.4 years ago iankoudinova ▴ 10

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1.8k

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microarray affymetrix microarrays analysis

updated 9.3 years ago by Guido Hooiveld ★ 4.1k • written 9.3 years ago by Michaela.Fuchs • 0

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1.7k

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edger data analysis

9.5 years ago Pau Marc Muñoz Torres ▴ 20

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1.9k

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cummeRbund Script analysis RNAseq cuffdiff

updated 9.7 years ago by andrew.j.skelton73 ▴ 370 • written 9.7 years ago by mfahim • 0

14 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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