Showing : atacseqqc • reset
1
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11
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2.3k
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ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
9
replies
3.6k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.1 years ago • updated 3.0 years ago Xiaojie Cheng • 0
2
votes
5
replies
1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
1
vote
2
replies
9.3k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.7 years ago by ★ 1.3k • written 3.8 years ago by • 0
0
votes
7
replies
2.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.2 years ago by • 0 • written 6.3 years ago by ▴ 10
5
votes
9
replies
3.8k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 10
0
votes
9
replies
1.5k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by ▴ 10
0
votes
2
replies
1.1k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
0
votes
5
replies
1.7k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
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1
reply
1.7k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
votes
1
reply
916
views
ATACseqQC questions in R language
atacseqqc
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
0
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1
reply
1.0k
views
ATACseqQC: a few questions
ATACseqQC
updated 5.9 years ago by ★ 4.3k • written 5.9 years ago by • 0
0
votes
3
replies
1.0k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 10
11
votes
21
replies
5.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 20
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 10
0
votes
1
reply
994
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
7
replies
1.6k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
2
replies
995
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
4
replies
1.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
1
vote
4
replies
1.2k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.7 years ago by ★ 4.3k • written 3.7 years ago by ▴ 10
0
votes
2
replies
1.4k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.9 years ago Nolan • 0
0
votes
7
replies
680
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 10 weeks ago by ▴ 10 • written 5 months ago by • 0
1
vote
1
reply
195
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 9 weeks ago by 65k • written 9 weeks ago by • 0
1
vote
7
replies
1.4k
views
TSSEscore function in ATACseqQC package
ATACseqQC
2.3 years ago Liu Yu-Yu • 0
0
votes
0
replies
599
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.2 years ago hyjforesight • 0
0
votes
0
replies
783
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.2 years ago Gary ▴ 20
0
votes
0
replies
125
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
10 weeks ago danalvoronov ▴ 10
0
votes
0
replies
489
views
NAs in TSSE for certain windows
ATACseqQC
2.7 years ago red_bricks ▴ 50
0
votes
7
replies
1.8k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.9 years ago by ★ 13k • written 4.9 years ago by • 0
0
votes
1
reply
574
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 16 months ago by ★ 1.3k • written 16 months ago by • 0
0
votes
0
replies
461
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.7 years ago xuyao15927402897 • 0
0
votes
5
replies
1.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
vote
4
replies
977
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.8 years ago Arpi Beshlikyan • 0
1
vote
2
replies
1.4k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.8 years ago beiting ▴ 30
0
votes
3
replies
1.1k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 21 months ago by ★ 5.2k • written 2.6 years ago by ▴ 30
35 results • Page 1 of 1
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Comment: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 220
Looks like `sgv_pred` does not have the expected format. Was it created or edited manually? I would always recommend creating objects with …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by pangtaihin • 0
Thank you:)
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by pangtaihin • 0
Thank you! But I apologize for cannot fully grasp your point. Do you mean that when the counts are high, rlogged matrix can represent the t…
Comment: Query regarding phyloseq object construct with QIIME output by Rosso • 0
Constructing a phyloseq object from QIIME output involves several steps to integrate taxonomic abundance data, sample metadata, and phyloge…
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Votes
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
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