Showing : bioconductor • reset
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
8 days ago BioinfGuru ▴ 30
3
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18
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2.9k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 10 days ago shepherl 3.8k
0
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0
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73
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
15 days ago shepherl 3.8k
0
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7
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353
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
28 days ago • updated 25 days ago needNGS • 0
0
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2
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167
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bioconductor emailing list
Bioconductor
updated 4 weeks ago by 3.8k • written 4 weeks ago by • 0
0
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0
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132
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
5 weeks ago Maria Doyle ▴ 70
0
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0
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119
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
5 weeks ago shepherl 3.8k
1
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2
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244
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
7 weeks ago thomas • 0
1
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0
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261
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
9 weeks ago • updated 7 weeks ago shepherl 3.8k
0
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1
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289
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 5 weeks ago by • 0 • written 9 weeks ago by ▴ 70
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0
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159
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
8 weeks ago Maria Doyle ▴ 70
6
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11
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935
views
Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 10 weeks ago gernophil • 0
0
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0
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162
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 70
2
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0
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229
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
10 weeks ago Maria Doyle ▴ 70
0
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1
reply
217
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 30
1
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4
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413
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Can't post a question containing code?
Bioconductor
updated 10 weeks ago by ▴ 730 • written 11 weeks ago by ▴ 10
0
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1
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195
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 11 weeks ago by 16k • written 11 weeks ago by • 0
0
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0
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202
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
2
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1
reply
272
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 12 weeks ago by • 0 • written 3 months ago by 3.8k
2
votes
2
replies
298
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
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4
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707
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
4
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3
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332
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
3
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1
reply
298
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
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0
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260
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
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3
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1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
1
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5
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2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
5
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1
reply
426
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
0
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0
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231
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Normalising processed Proteomics data in R
Bioconductor Proteomics
5 months ago Joshua • 0
0
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6
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2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 17 months ago by • 0
2
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0
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477
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
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0
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279
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
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4
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598
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
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2
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770
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
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3
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539
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
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1
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334
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
4
votes
10
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1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.8k • written 19 months ago by ▴ 30
0
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0
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355
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
votes
1
reply
839
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
2
votes
11
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917
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 11 weeks ago by ★ 3.9k • written 6 months ago by • 0
5
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2
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733
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
votes
2
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628
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
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1
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3.4k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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912
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
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0
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612
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
8 months ago NewtoBioconductor • 0
1
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4
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742
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
1
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382
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
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2
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651
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
1
vote
13
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11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
0
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0
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441
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
8 months ago Maria Doyle ▴ 70
50 results • Page 1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards • All
Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
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Scholar to Michael Love 41k
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