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0
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2
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335
views
NCBI protein conversion to CDNA and NCBI gene (in R)
convert
updated 4 months ago by 65k • written 4 months ago by • 0
0
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21
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BAM files to Genomic Ranges object
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updated 5 months ago by • 0 • written 11.3 years ago by ▴ 280
1
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3
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449
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updated 5 months ago by 65k • written 5 months ago by • 0
2
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763
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Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
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5 months ago j_denton • 0
2
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1
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664
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Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
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updated 9 months ago by 65k • written 9 months ago by • 0
1
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RNA-seq analysis using R
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updated 12 months ago by 50k • written 5.4 years ago by • 0
0
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1
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voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
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updated 16 months ago by 50k • written 11.9 years ago by ★ 6.5k
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2
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How to convert Illumina HT_12_v4 annotation
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updated 16 months ago by ▴ 20 • written 6.4 years ago by • 0
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converting position from '-' strand to '+' strand
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updated 22 months ago by ▴ 10 • written 14.1 years ago by ★ 1.1k
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written 11.7 years ago by ▴ 70
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2.9 years ago nicocillari • 0
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updated 3.5 years ago by ★ 6.5k • written 3.5 years ago by • 0
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convert affy CEL files to data.frame??
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updated 5.6 years ago by • 0 • written 13.2 years ago by ▴ 40
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Can XCMS output continuum/profile data to netCDF format?
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updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
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To convert MAList to ExpressionSet using R package 'convert'
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updated 7.5 years ago by 50k • written 7.5 years ago by • 0
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How to reverse translate amino acid sequence into mammalian codon optimised cDNA
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written 9.4 years ago by ▴ 20
1
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1
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converting amino-acid one letter code into cDNA sequene
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7.9 years ago arvind90.psc • 0
1
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2
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
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updated 8.1 years ago by 50k • written 8.1 years ago by • 0
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minfi, bumphunter + complex experimental design, and 3 other 450K queries
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updated 8.3 years ago by ▴ 30 • written 9.9 years ago by ★ 3.9k
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Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.3 years ago by 65k • written 8.3 years ago by • 0
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Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
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updated 8.5 years ago by • 0 • written 10.2 years ago by ★ 6.5k
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How to convert codominant Microsatellite two column data into illumina AB format?
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8.5 years ago parka • 0
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3
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How to combine expression values of multiple probes for one gene
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updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
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[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
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updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
5
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Metagenomic analysis: Aligning ChIPseq data on TSS
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9.6 years ago patrick.schordert ▴ 30
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2.0k
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Converting .gpr files to .csv files
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updated 9.6 years ago by 65k • written 9.6 years ago by ★ 13k
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Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
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updated 9.6 years ago by ▴ 80 • written 9.6 years ago by ▴ 50
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ChIPpeakAnno
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narrow and xstringset
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updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 680
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Biomart annotation
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ShortReadQ and conversion of quality scores to characters
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updated 9.8 years ago by 25k • written 9.8 years ago by ▴ 310
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SomaticSignatures
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updated 9.8 years ago by ★ 1.3k • written 9.8 years ago by ▴ 90
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converting probeset id to gene id's : fRMA
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updated 9.8 years ago by ★ 3.0k • written 9.9 years ago by ▴ 190
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Approaches to building Rle sequences from ranges
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updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ▴ 40
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updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 10
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GenomicAlignments and QNAME collision
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updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ★ 6.8k
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error on loading ratioConvert() in minfi
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updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ★ 13k
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Mapping gene symbols to gene names (org.Hs.eg.db?)
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updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.1k
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viewApply drops feature names; transfer names between lists
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updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.5k
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summarizeOverlaps using GRanges or bed file as reads?
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updated 10.0 years ago by 25k • written 10.0 years ago by ★ 7.9k
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A question about the function readGAlignmentPairs in GenomicRnages package
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updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 50
0
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CellMix package use with own data matrix
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DMR identification: minfi speed, memory problems
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updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
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DMR identification: minfi speed, memory problems
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50 results • Page 1 of 1
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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