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developers bioc-devel

6.1 years ago Casper van Mourik • 0

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developers bioc-devel package development circular dependencies

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by Tim Triche ★ 4.2k

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bioconductor developers bioc-devel News

6.7 years ago Alejandro Reyes ★ 1.9k

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git github developers

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github package updates developers package development

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github vignette test developers

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r developers devel

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by MarcinKosiński • 0

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software bioc-devel developers R

updated 9.2 years ago by Dan Tenenbaum ★ 8.2k • written 9.2 years ago by MarcinKosiński • 0

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developers conference workshop News

updated 9.2 years ago by Laurent Gatto 1.6k • written 9.3 years ago by Mark Dunning ★ 1.1k

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bioconductor devel developers

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package bioconductor bioc-devel developers

9.6 years ago flying-sheep ▴ 10

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developers workshop conference meeting News

10.2 years ago Wolfgang Huber ★ 13k

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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