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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
7.1 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.8k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 7.2 years ago by
shepherl
4.2k • written 7.2 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.8k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
7.6 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
2.1k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 7.9 years ago by
nitesh.turaga
▴ 140 • written 7.9 years ago by
wirth
• 0
1
vote
3
replies
2.6k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
8.2 years ago
rtraborn
• 0
1
vote
1
reply
1.3k
views
flowDensity got downgraded
flowDensity
developers
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
mmalek
• 0
3
votes
2
replies
1.5k
views
Changing lead developer for existing package
developers
bioc-devel
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
mlbendall
• 0
1
vote
2
replies
2.1k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.4k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
MarcinKosiński
• 0
1
vote
3
replies
2.2k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 10.1 years ago by
Dan Tenenbaum
★ 8.2k • written 10.1 years ago by
MarcinKosiński
• 0
7
votes
5
replies
3.6k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 10.1 years ago by
Laurent Gatto
1.6k • written 10.3 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.6k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 10.5 years ago by
Martin Morgan
25k • written 10.5 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
2.2k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
10.6 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.5k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
11.2 years ago
Wolfgang Huber
★ 13k
14 results • Page
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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