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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
7.0 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.8k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 7.1 years ago by
shepherl
4.2k • written 7.1 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.7k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
7.6 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
2.0k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 7.8 years ago by
nitesh.turaga
▴ 140 • written 7.8 years ago by
wirth
• 0
1
vote
3
replies
2.5k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
8.1 years ago
rtraborn
• 0
1
vote
1
reply
1.2k
views
flowDensity got downgraded
flowDensity
developers
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
mmalek
• 0
3
votes
2
replies
1.5k
views
Changing lead developer for existing package
developers
bioc-devel
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
mlbendall
• 0
1
vote
2
replies
2.1k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.4k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
MarcinKosiński
• 0
1
vote
3
replies
2.1k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
MarcinKosiński
• 0
7
votes
5
replies
3.5k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 10.0 years ago by
Laurent Gatto
1.6k • written 10.2 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.6k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
2.1k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
10.5 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.5k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
11.1 years ago
Wolfgang Huber
★ 13k
14 results • Page
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Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
Kevin Blighe
★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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