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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.0 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.5k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 6.1 years ago by
shepherl
4.1k • written 6.1 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.3k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.6 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.7k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 6.9 years ago by
nitesh.turaga
▴ 140 • written 6.9 years ago by
wirth
• 0
1
vote
3
replies
2.2k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
7.2 years ago • updated 7.1 years ago
rtraborn
• 0
1
vote
1
reply
987
views
flowDensity got downgraded
flowDensity
developers
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
mmalek
• 0
3
votes
2
replies
1.3k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
mlbendall
• 0
1
vote
2
replies
1.8k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.2k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
MarcinKosiński
• 0
1
vote
3
replies
1.8k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
MarcinKosiński
• 0
7
votes
5
replies
3.2k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 9.1 years ago by
Laurent Gatto
1.6k • written 9.2 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.4k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
1.8k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.5 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.2k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
10.1 years ago
Wolfgang Huber
★ 13k
14 results • Page
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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