Bioconductor Dmr

Showing : dmr • reset

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3.6k

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bsseq dmr ttest pvalue

updated 8.2 years ago by James W. MacDonald 65k • written 8.2 years ago by enricoferrero ▴ 660

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.3 years ago by rafa ▴ 60 • written 7.3 years ago by chelsey.ju • 0

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912

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bumphunter DMR methylation minfi

4.2 years ago i.s.brorson • 0

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.3 years ago by l.kremer • 0

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Ellen O • 0

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1.4k

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bumphunter DMR doparallel multicore

updated 9 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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1.6k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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853

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DMR bumphunter EPIC chip

4.2 years ago i.s.brorson • 0

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1.5k

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dmrcate dmr analysis dmr

updated 7.3 years ago by Tim Peters ▴ 180 • written 7.3 years ago by alexandria.andrayas ▴ 10

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527

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edgeR DMR

updated 15 months ago by Michael Love 41k • written 15 months ago by Fiona • 0

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801

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ChAMP DMR

updated 3.9 years ago by Yuan Tian ▴ 280 • written 3.9 years ago by olive8306 • 0

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729

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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750

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.6 years ago AST ▴ 60

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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709

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

20 results • Page 1 of 1

Recent ...

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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