Bioconductor Dmr

Showing : dmr • reset

votes

replies

4.0k

views

bsseq dmr ttest pvalue

updated 8.7 years ago by James W. MacDonald 67k • written 8.7 years ago by enricoferrero ▴ 660

votes

replies

1.5k

views

BiSeq DMR

updated 4.3 years ago by James W. MacDonald 67k • written 4.3 years ago by akhaira • 0

vote

replies

4.6k

views

bumphunter DMR DMR analysis minfi bioconductor

updated 7.8 years ago by rafa ▴ 60 • written 7.8 years ago by chelsey.ju • 0

votes

replies

1.1k

views

bumphunter DMR methylation minfi

4.7 years ago i.s.brorson • 0

vote

replies

1.8k

views

DMR Methylation R Gviz

updated 10 months ago by Robert Ivanek ▴ 750 • written 3.4 years ago by ltzhou • 0

votes

replies

1.6k

views

dmrseq dmr dmrs bisulfite methylation

updated 6.6 years ago by keegan ▴ 60 • written 6.7 years ago by l.kremer • 0

vote

replies

2.7k

views

dmr methylation deseq2 bsseq biseq

updated 9.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.0 years ago by enricoferrero ▴ 660

votes

replies

1.3k

views

illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Ellen O • 0

votes

replies

1.6k

views

bumphunter DMR doparallel multicore

updated 14 months ago by Alessandro • 0 • written 6.4 years ago by arce.domingo.1407 • 0

votes

replies

1.9k

views

ChAMP DMR champ.DMR

6.0 years ago yuabrahamliu • 0

votes

replies

988

views

DMR bumphunter EPIC chip

4.7 years ago i.s.brorson • 0

votes

1.7k

views

dmrcate dmr analysis dmr

updated 7.7 years ago by Tim Peters ▴ 200 • written 7.7 years ago by alexandria.andrayas ▴ 10

votes

714

views

edgeR DMR

updated 20 months ago by Michael Love 42k • written 20 months ago by Fiona • 0

votes

939

views

ChAMP DMR

updated 4.4 years ago by Yuan Tian ▴ 290 • written 4.4 years ago by olive8306 • 0

votes

844

views

BiSeq testClusters error dmr

4.3 years ago akhaira • 0

vote

2.5k

views

dmr MethylationArrayData DMRcatedata

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Julie • 0

votes

replies

871

views

Biseq Methylation DMP DMR RRBS

4.2 years ago i.s.castanho • 0

vote

replies

1.4k

views

ChAMP minfi DMR dmr analysis lasso

9.0 years ago AST ▴ 60

vote

replies

1.8k

views

methylation linear model dmr bsseq biseq

8.8 years ago enricoferrero ▴ 660

votes

replies

821

views

methylsig no replicates dmr

6.2 years ago nilaycan • 0

20 results • Page 1 of 1

Recent ...

Replies

Comment: pathview error "negative length vectors are not allowed by Evan • 0

Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by James W. MacDonald 67k

You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…

Comment: QSEA- Extraction of Normalized methylation across the samples by celiaruby127 • 0

If you need specific counts for defined regions or windows, you may want to explore other functions or slots within the QSEA object that co…

Votes

Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat

Answer: How to conduct maSigPro analysis with only one condition?

Answer: Removing Effect of Covariate in Only a Subset of Samples in a Model Containing A

Answer: Importing data into the DESeq2 pipeline using tximport

Awards • All