Showing : dose • reset
4
votes
4
replies
4.2k
views
Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 18 months ago by • 0 • written 7.7 years ago by ▴ 660
4
votes
3
replies
1.9k
views
BiocParallel: object export issue
BiocParallel DOSE
updated 7.5 years ago by 25k • written 7.5 years ago by ★ 3.9k
2
votes
2
replies
3.5k
views
enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE clusterprofiler annotation gene ontology gene set enrichment
updated 6.5 years ago by ★ 1.2k • written 6.5 years ago by ▴ 10
2
votes
6
replies
3.1k
views
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler DOSE GSEA_internal USER_DATA leading edge Analysis
7.6 years ago Riba Michela ▴ 90
2
votes
5
replies
1.8k
views
Need help setting up DESeq2 complex model for multi-dose experiment
deseq2 multiple time points dose
updated 7.2 years ago by 41k • written 7.2 years ago by • 0
1
vote
4
replies
3.1k
views
gseDO function input
DOSE clusterprofiler
updated 6.7 years ago by ★ 1.2k • written 6.7 years ago by • 0
1
vote
1
reply
1.6k
views
Treatment dose in treatment-control RNA-seq
deseq2 edger dose rna-seq
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
1
vote
2
replies
5.5k
views
ClusterProfiler DotPlot Vs Ridgeplot
clusterProfiler DOSE
updated 16 months ago by • 0 • written 20 months ago by • 0
1
vote
3
replies
1.6k
views
Subset of genes can find a term but whole set cannot
biomart dose
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
1
vote
2
replies
2.5k
views
Regression using LIMMA
affy limma DOSE affy limma DOSE
updated 13.5 years ago by ★ 6.0k • written 13.5 years ago by ▴ 380
1
vote
1
reply
1.2k
views
dotplot in DOSE
compilation error DOSE
6.0 years ago alper.kucukural ▴ 10
1
vote
1
reply
1.6k
views
ReactomePA viewPathway DE node and legend colour
DOSE ReactomePA
7.3 years ago Kajus Baidžajevas ▴ 10
0
votes
0
replies
1.2k
views
robust linear model in anovas
DOSE DOSE
20.1 years ago Arne.Muller@aventis.com ▴ 620
0
votes
1
reply
988
views
programming problem: running many ANOVAs
DOSE DOSE
updated 20.0 years ago by ▴ 130 • written 20.0 years ago by ▴ 620
0
votes
0
replies
797
views
A single linear model for all
DOSE DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.0 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
992
views
Probe level analysis
probe limma DOSE probe limma DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.5k
views
Anova with ratios
affy DOSE affy DOSE
19.9 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
Friedman test
DOSE DOSE
19.7 years ago Arne.Muller@aventis.com ▴ 620
0
votes
1
reply
1.3k
views
unbalanced design
limma DOSE limma DOSE
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 620
0
votes
1
reply
1.2k
views
normalizaton between studies
Normalization vsn DOSE Normalization vsn DOSE
updated 19.4 years ago by ▴ 10 • written 19.4 years ago by ▴ 620
0
votes
1
reply
2.1k
views
Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 19.3 years ago by ▴ 360 • written 19.3 years ago by ▴ 620
0
votes
0
replies
1.6k
views
RMA normalization,which samples should be normalized together
Normalization probe affy limma gcrma DOSE Normalization probe affy limma gcrma DOSE
19.2 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
1
reply
1.5k
views
Re: Limma: M value in toptable
limma DOSE limma DOSE
updated 19.2 years ago by ▴ 60 • written 19.2 years ago by 50k
0
votes
4
replies
1.5k
views
microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
0
votes
0
replies
1.2k
views
microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
1.1k
views
about microarray batch effect and treatment effect
affy DOSE affy DOSE
16.4 years ago Aedin Culhane ▴ 510
0
votes
0
replies
1.2k
views
Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
16.3 years ago Johnstone, Alice ▴ 410
0
votes
5
replies
3.0k
views
Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ★ 1.9k
0
votes
4
replies
1.6k
views
GEO annotation
Annotation DOSE Annotation DOSE
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 110
0
votes
9
replies
4.5k
views
GEOquery installation problem
DOSE DOSE
14.8 years ago zhihua zhang ▴ 50
0
votes
1
reply
1.2k
views
limma: writing down the matrix in an almost (?) factorial design experiment
Microarray DOSE Microarray DOSE
14.2 years ago Massimo Pinto ▴ 390
0
votes
2
replies
1.8k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 13.4 years ago by ★ 4.3k • written 13.4 years ago by ▴ 120
0
votes
1
reply
1.5k
views
LIMMA: donor effect
Microarray limma DOSE Microarray limma DOSE
updated 13.0 years ago by ▴ 380 • written 13.0 years ago by 50k
0
votes
2
replies
1.3k
views
about limma linear models
Microarray limma DOSE Microarray limma DOSE
updated 13.0 years ago by ▴ 40 • written 13.0 years ago by 50k
0
votes
0
replies
1.1k
views
Identifying expression trends in RNA-seq experiment - through edgeR
edgeR DOSE edgeR DOSE
10.8 years ago Sandhya Pemmasani Kiran ▴ 40
0
votes
3
replies
1.8k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO clusterProfiler DOSE GO clusterProfiler DOSE
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ★ 13k
0
votes
0
replies
1.4k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO Cancer Rgraphviz clusterProfiler DOSE GO Cancer Rgraphviz clusterProfiler DOSE
10.8 years ago Martin Morgan 25k
0
votes
0
replies
920
views
Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.0 years ago Tarca Adi Laurentiu ▴ 100
0
votes
2
replies
1.8k
views
question about design for limma time course, 2 conditions and drug treatment microarray experiment
Microarray DOSE Microarray DOSE
updated 10.4 years ago by ▴ 190 • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.4k
views
strange log2FoldChange estimates
RNASeq DOSE DESeq2 RNASeq DOSE DESeq2
9.7 years ago Shi, Tao ▴ 720
0
votes
0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.5 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
2.7k
views
Modifying the legend in cnetplot function
clusterProfiler DOSE
8.4 years ago Vinicius Henrique da Silva ▴ 40
0
votes
3
replies
1.2k
views
Failed to install 'DOSE' package. Win10, 'single candle'
DOSE package installation windows10
6.8 years ago Yisong Zhen ▴ 200
0
votes
2
replies
1.6k
views
Reference for edge and node properties suitable for enrichMap{DOSE}
DOSE ReactomePA enrichMap enrichPathway
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by • 0
0
votes
1
reply
989
views
How to change the siez of lables in heatmap
software error go dose heatplot gseGo
5.3 years ago aboumarshal • 0
0
votes
0
replies
1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
0
votes
1
reply
731
views
Disease semantic similarity
DOSE
5.0 years ago ahmettoprak42 • 0
0
votes
2
replies
2.0k
views
DO.db is missing after repeated installations-ReactomePA-ClusterProfiler-DOSE
software error reactomePA DOSE DO.db there is no package called ‘DO.db’
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
0
votes
0
replies
757
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards • All
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.8k
Popular Question to siajunren • 0
Scholar to Rory Stark ★ 5.2k
Popular Question to tangming2005 ▴ 190
Locations • All
United Kingdom, 3 minutes ago
Seattle, WA, United States, 9 minutes ago
United States, 10 minutes ago
United States, 13 minutes ago
France, 15 minutes ago
Traffic: 813 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6