Showing : genesetenrichment • reset
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fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea GeneSetEnrichment splines RNASeq
7 months ago GT • 0
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337
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News: GSEA in R/Bioconductor course
GSEABenchmarkeR pairedGSEA GeneSetEnrichment
8 months ago info ▴ 10
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2
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667
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cameraPR() non directional test
CAMERA GeneSetEnrichment
8 months ago Hugo Varet ▴ 80
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1
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728
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News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
8 months ago info ▴ 10
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1
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386
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Comparing Mock vs Infected in WT and Knockout Cells
DESeq2 DifferentialExpression DifferentialRegulation RNASeq GeneSetEnrichment
updated 9 months ago by 43k • written 9 months ago by • 0
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1.2k
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
14 months ago Assa Yeroslaviz ★ 1.5k
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How to rank DEG for GSEA using DEseq2 result ?
DESeq2 limma GeneSetEnrichment
updated 15 months ago by ★ 5.0k • written 15 months ago by • 0
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1.4k
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Gene set enrichment analysis
clusterProfiler GeneSetEnrichment
updated 18 months ago by ★ 4.1k • written 18 months ago by • 0
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2.5k
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geneList error in clusterprofiler
clusterProfiler GeneSetEnrichment
19 months ago Ana • 0
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1.1k
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
19 months ago Seongsu • 0
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5.2k
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 19 months ago by • 0 • written 7.9 years ago by ▴ 20
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823
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BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
2.3 years ago sonal • 0
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2.1k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
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What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
3.4 years ago Bhavana • 0
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1.7k
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by • 0
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13k
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 21 months ago by ★ 5.0k • written 3.7 years ago by ▴ 70
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2.1k
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GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
4.0 years ago makrez ▴ 10
3
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2
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2.0k
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Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 4.9 years ago by 53k • written 4.9 years ago by • 0
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1.9k
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Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.8 years ago by ▴ 40 • written 4.9 years ago by • 0
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
5.0 years ago paun_bio • 0
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4
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3.8k
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Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
9.5 years ago José Luis Lavín ▴ 10
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1.4k
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performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 160
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1.7k
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News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
9.8 years ago Ludwig Geistlinger ▴ 70
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7
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6.0k
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Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 270
2
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1
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1.4k
views
elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 40
2
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2
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2.5k
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Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 10.2 years ago by ▴ 320 • written 10.2 years ago by ▴ 20
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14
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5.1k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 10.6 years ago by ▴ 150 • written 11.0 years ago by ★ 1.2k
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1
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6.1k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 150
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1.4k
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
10.9 years ago Peter.Wood • 0
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2.1k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
11.0 years ago Guangchuang Yu ★ 1.2k
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2.3k
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ▴ 70
31 results • Page 1 of 1
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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