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Showing :
genesetenrichment
•
reset
0
votes
1
reply
486
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 11 months ago by
info
▴ 10
0
votes
0
replies
649
views
fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea
GeneSetEnrichment
splines
RNASeq
10 months ago
GT
• 0
0
votes
2
replies
736
views
cameraPR() non directional test
CAMERA
GeneSetEnrichment
11 months ago
Hugo Varet
▴ 80
0
votes
1
reply
891
views
News:
Gene Set Enrichment Analysis in Bioconductor course
GSEABase
GeneSetEnrichment
goseq
11 months ago
info
▴ 10
0
votes
1
reply
487
views
Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
updated 11 months ago by
Michael Love
43k • written 12 months ago by
Sahil
• 0
2
votes
2
replies
1.3k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
17 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.2k
views
How to rank DEG for GSEA using DEseq2 result ?
DESeq2
limma
GeneSetEnrichment
updated 18 months ago by
ATpoint
★ 5.0k • written 18 months ago by
picasa1983
• 0
0
votes
1
reply
1.9k
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 21 months ago by
Guido Hooiveld
★ 4.1k • written 21 months ago by
aogunbaw
• 0
1
vote
2
replies
2.9k
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
21 months ago
Ana
• 0
0
votes
2
replies
1.2k
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
22 months ago
Seongsu
• 0
4
votes
4
replies
5.6k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 22 months ago by
jandrade
• 0 • written 8.1 years ago by
Huang, Lei [BSD] - CRI
▴ 20
0
votes
0
replies
892
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
2.6 years ago
sonal
• 0
0
votes
1
reply
2.4k
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
manuelsokolov
• 0
0
votes
2
replies
6.3k
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA
GeneSetEnrichment
3.6 years ago
Bhavana
• 0
0
votes
1
reply
1.8k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 3.6 years ago by
Basti
▴ 780 • written 3.6 years ago by
Noy
• 0
12
votes
13
replies
14k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 2.0 years ago by
ATpoint
★ 5.0k • written 3.9 years ago by
nhaus
▴ 70
1
vote
0
replies
2.2k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
4.3 years ago
makrez
▴ 10
3
votes
2
replies
2.1k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.1 years ago by
Gordon Smyth
53k • written 5.1 years ago by
prabin.dm
• 0
0
votes
1
reply
2.0k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 5.1 years ago by
Emilia
▴ 40 • written 5.2 years ago by
saw44
• 0
0
votes
0
replies
913
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
5.2 years ago
paun_bio
• 0
1
vote
4
replies
4.0k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
9.8 years ago
José Luis Lavín
▴ 10
1
vote
0
replies
1.5k
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma
genesetenrichment
updated 9.9 years ago by
Steve Lianoglou
★ 13k • written 9.9 years ago by
Aditya
▴ 160
1
vote
0
replies
1.8k
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
10.0 years ago
Ludwig Geistlinger
▴ 80
5
votes
7
replies
6.2k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
Jon Bråte
▴ 270
2
votes
1
reply
1.4k
views
elim method for KEGG pathways?
KEGG
genesetenrichment
elim
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
jacorvar
▴ 40
2
votes
2
replies
2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq
genesetenrichment
annotation
updated 10.5 years ago by
Nadia Davidson
▴ 320 • written 10.5 years ago by
xyliu00
▴ 20
8
votes
14
replies
5.4k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 10.8 years ago by
willem.ligtenberg
▴ 150 • written 11.2 years ago by
Guangchuang Yu
★ 1.2k
1
vote
1
reply
6.3k
views
Reduce the redundancy of enriched GO terms
GO
topgo
genesetenrichment
updated 11.0 years ago by
Luo Weijun
★ 1.6k • written 11.0 years ago by
Alan Smith
▴ 150
0
votes
0
replies
1.5k
views
Using segAnglePo() for a set of genes
geneexpression
genesetenrichment
segAnglePo
11.1 years ago
Peter.Wood
• 0
0
votes
0
replies
2.1k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
11.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
3
replies
2.4k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Leif Väremo
▴ 70
31 results • Page
1 of 1
Recent ...
Replies
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Awards
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Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Popular Question
to
James W. MacDonald
68k
Popular Question
to
rcavalca
▴ 140
Popular Question
to
James Aiden
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