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Showing : genesetenrichment • reset
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News: GSEA in R/Bioconductor course
GSEABenchmarkeR pairedGSEA GeneSetEnrichment
written 11 months ago by ▴ 10
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607
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fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea GeneSetEnrichment splines RNASeq
10 months ago GT • 0
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2
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729
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cameraPR() non directional test
CAMERA GeneSetEnrichment
11 months ago Hugo Varet ▴ 80
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1
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881
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News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
11 months ago info ▴ 10
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1
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481
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Comparing Mock vs Infected in WT and Knockout Cells
DESeq2 DifferentialExpression DifferentialRegulation RNASeq GeneSetEnrichment
updated 11 months ago by 43k • written 11 months ago by • 0
2
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2
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1.3k
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
17 months ago • updated 16 months ago Assa Yeroslaviz ★ 1.5k
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1.2k
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How to rank DEG for GSEA using DEseq2 result ?
DESeq2 limma GeneSetEnrichment
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
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1
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1.8k
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Gene set enrichment analysis
clusterProfiler GeneSetEnrichment
updated 20 months ago by ★ 4.1k • written 20 months ago by • 0
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2
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2.8k
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geneList error in clusterprofiler
clusterProfiler GeneSetEnrichment
21 months ago Ana • 0
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2
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1.2k
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
22 months ago Seongsu • 0
4
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4
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5.5k
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 22 months ago by • 0 • written 8.1 years ago by ▴ 20
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887
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BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
2.5 years ago sonal • 0
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1
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2.4k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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2
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6.3k
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What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
3.6 years ago Bhavana • 0
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1.8k
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by • 0
12
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13
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14k
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 24 months ago by ★ 5.0k • written 3.9 years ago by ▴ 70
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2.2k
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GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
4.3 years ago makrez ▴ 10
3
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2
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2.1k
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Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 5.1 years ago by 53k • written 5.1 years ago by • 0
0
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1
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2.0k
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Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.1 years ago by ▴ 40 • written 5.1 years ago by • 0
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911
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
5.2 years ago paun_bio • 0
1
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4
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4.0k
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Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
9.7 years ago José Luis Lavín ▴ 10
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1.5k
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performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 9.9 years ago by ★ 13k • written 9.9 years ago by ▴ 160
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1.8k
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News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
10.0 years ago Ludwig Geistlinger ▴ 80
5
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7
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6.2k
views
Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 10.1 years ago by 53k • written 10.1 years ago by ▴ 270
2
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1
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1.4k
views
elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 40
2
votes
2
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2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 10.4 years ago by ▴ 320 • written 10.4 years ago by ▴ 20
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14
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5.4k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 10.8 years ago by ▴ 150 • written 11.2 years ago by ★ 1.2k
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1
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6.3k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ▴ 150
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1.5k
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
11.1 years ago Peter.Wood • 0
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2.1k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
11.2 years ago Guangchuang Yu ★ 1.2k
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3
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2.4k
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 70
31 results • Page 1 of 1
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Votes
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
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