Showing : gosemsim • reset
0
votes
0
replies
138
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
7 weeks ago daccar98 • 0
0
votes
1
reply
610
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 17 months ago by ▴ 760 • written 17 months ago by • 0
1
vote
1
reply
892
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 22 months ago by ▴ 760 • written 23 months ago by ▴ 10
0
votes
2
replies
2.3k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.1 years ago Chruut • 0
0
votes
0
replies
900
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.9 years ago Amandeep • 0
0
votes
3
replies
2.2k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.9 years ago by 52k • written 2.9 years ago by ▴ 90
0
votes
1
reply
1.2k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 4.3 years ago by 6.7k • written 4.3 years ago by • 0
0
votes
1
reply
1.3k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
0
votes
1
reply
2.1k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.6 years ago Jenny Drnevich ★ 2.0k
1
vote
1
reply
1.8k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
1
vote
3
replies
1.4k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
5.5 years ago helenlong1 • 0
0
votes
1
reply
981
views
Using GoSemSim with other Ontologies
GOSemSim
updated 5.5 years ago by ▴ 760 • written 5.5 years ago by • 0
3
votes
12
replies
3.1k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.8 years ago sergi.picart ▴ 20
0
votes
1
reply
1.2k
views
Gene similarity by GOSemSim
gosemsim mgenesim
6.0 years ago athirak1986 • 0
0
votes
0
replies
1.2k
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
6.1 years ago nooshin ▴ 300
0
votes
2
replies
1.4k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 6.1 years ago by ★ 1.2k • written 6.1 years ago by • 0
2
votes
2
replies
2.0k
views
Error: could not find function "godata"
gosemsim
6.5 years ago anton.kratz ▴ 60
0
votes
1
reply
1.3k
views
GO similarity by GOSemSim
gosemsim similarity
6.5 years ago ahatashkar • 0
8
votes
5
replies
2.7k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.9 years ago by • 0 • written 6.9 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.8 years ago by ▴ 760 • written 9.2 years ago by ▴ 10
1
vote
12
replies
3.9k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 10
0
votes
5
replies
1.8k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 8.4 years ago by ★ 1.2k • written 8.4 years ago by ▴ 10
0
votes
4
replies
1.7k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.7 years ago bnembarekmarwa • 0
1
vote
1
reply
1.4k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.7 years ago by ★ 1.2k • written 8.7 years ago by • 0
0
votes
9
replies
3.2k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 9.4 years ago by ▴ 10 • written 9.7 years ago by • 0
0
votes
4
replies
2.1k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.7 years ago cpcantalapiedra • 0
1
vote
2
replies
2.0k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.9 years ago by ★ 1.2k • written 9.9 years ago by ▴ 10
0
votes
0
replies
1.9k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.1 years ago Guangchuang Yu ★ 1.2k
0
votes
1
reply
1.6k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ★ 13k
0
votes
0
replies
1.4k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.3 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
1.0k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.4 years ago Guest User ★ 13k
0
votes
1
reply
1.5k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 12.4 years ago by ★ 1.2k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.3k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 20
34 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to rohitsatyam102 ▴ 20
Popular Question to Hervé Pagès 16k
Teacher to dsull ▴ 40
Popular Question to bpshtiwan ▴ 10
Locations • All
India, 30 minutes ago
Sweden, 50 minutes ago
UPF, Barcelona, Spain, 1 hour ago
Pakistan, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 428 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6