Showing : gosemsim • reset
1
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12
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3.3k
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Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 10
0
votes
9
replies
2.9k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.8 years ago by ▴ 10 • written 9.1 years ago by • 0
3
votes
12
replies
2.6k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
8
votes
5
replies
2.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 60
0
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4
replies
1.9k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.0 years ago cpcantalapiedra • 0
1
vote
2
replies
1.8k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
2
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2
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1.8k
views
Error: could not find function "godata"
gosemsim
5.9 years ago anton.kratz ▴ 60
0
votes
3
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1.8k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.3 years ago by 50k • written 2.3 years ago by ▴ 90
0
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1
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1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
3.9 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.7k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.5 years ago Guangchuang Yu ★ 1.2k
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress GO.db GOSemSim
17 months ago Chruut • 0
0
votes
5
replies
1.5k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 10
0
votes
1
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1.5k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.4 years ago by ★ 1.2k • written 10.5 years ago by ★ 13k
0
votes
4
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1.4k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.0 years ago bnembarekmarwa • 0
0
votes
1
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1.4k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.8 years ago by ★ 1.2k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
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1
reply
1.3k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by • 0
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0
replies
1.2k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.6 years ago Guangchuang Yu ★ 1.2k
0
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1
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1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.4 years ago by ★ 1.2k • written 5.4 years ago by • 0
1
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3
replies
1.2k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
4.8 years ago helenlong1 • 0
0
votes
1
reply
1.1k
views
GO similarity by GOSemSim
gosemsim similarity
5.9 years ago ahatashkar • 0
0
votes
1
reply
1.1k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ▴ 10
0
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1
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1.1k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.6 years ago by 6.7k • written 3.6 years ago by • 0
0
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1
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1.0k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
0
votes
0
replies
998
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.4 years ago nooshin ▴ 300
0
votes
1
reply
945
views
Gene similarity by GOSemSim
gosemsim mgenesim
5.4 years ago athirak1986 • 0
0
votes
0
replies
919
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.7 years ago Guest User ★ 13k
0
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1
reply
826
views
Using GoSemSim with other Ontologies
GOSemSim
updated 4.8 years ago by ▴ 730 • written 4.8 years ago by • 0
0
votes
0
replies
686
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.3 years ago Amandeep • 0
1
vote
1
reply
650
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
0
votes
1
reply
407
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 9 months ago by ▴ 730 • written 10 months ago by • 0
33 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
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From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
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A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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