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Showing :
gviz
•
reset
0
votes
2
replies
203
views
Justify title track when rotation = 0
Gviz
gviz
written 4 weeks ago by
Xenia
• 0
0
votes
1
reply
199
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 4 weeks ago by
Xenia
• 0
0
votes
0
replies
352
views
Simple confidence intervall Gviz
Gviz
11 months ago
William
• 0
0
votes
1
reply
1.8k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
updated 13 months ago by
ming
• 0 • written 4.2 years ago by
Ahdee
▴ 60
0
votes
1
reply
772
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
updated 9 months ago by
macdonaldfrench7286566
• 0 • written 16 months ago by
Marco
• 0
0
votes
3
replies
2.0k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 19 months ago by
Maryna
• 0 • written 2.4 years ago by
Michael
• 0
0
votes
3
replies
1.1k
views
Gviz and custom database
Gviz
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
luigi.faino
• 0
1
vote
2
replies
2.5k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 22 months ago by
Tim Peters
▴ 230 • written 3.0 years ago by
jose.ramirez1
▴ 10
0
votes
1
reply
801
views
GC content track on GVIZ
Gviz
updated 2.0 years ago by
James W. MacDonald
68k • written 2.0 years ago by
ilaria.maurizio
• 0
1
vote
3
replies
2.8k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 2.3 years ago by
Robert Ivanek
▴ 750 • written 4.8 years ago by
ltzhou
• 0
0
votes
0
replies
937
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
2.3 years ago
dbsgtk
• 0
1
vote
0
replies
1.1k
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
2.3 years ago
yujin
▴ 10
1
vote
3
replies
1.2k
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 2.3 years ago by
Hervé Pagès
16k • written 2.3 years ago by
yujin
▴ 10
0
votes
5
replies
3.1k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
3.2 years ago • updated 2.4 years ago
Daniel E. Weeks
▴ 30
0
votes
2
replies
1.0k
views
how to add annotation on individual track
Gviz
updated 2.8 years ago by
Robert Ivanek
▴ 750 • written 2.8 years ago by
xiaofeiwang18266
▴ 60
0
votes
0
replies
826
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
3.0 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.3k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
3.0 years ago
gilliangoobie
• 0
0
votes
2
replies
2.1k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi
Gviz
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
anikajohn
• 0
0
votes
1
reply
1.8k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
3.6 years ago
rohitsatyam102
▴ 20
4
votes
1
reply
2.7k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 3.7 years ago by
James W. MacDonald
68k • written 3.7 years ago by
hsf378
• 0
1
vote
3
replies
3.1k
views
GVIZ giving error with loading hg38 genome
R
Gviz
3.8 years ago
RUser743
• 0
1
vote
2
replies
2.3k
views
Gviz and datatracks
Gviz
updated 4.0 years ago by
corinne_hutfilz
• 0 • written 4.1 years ago by
Bogdan
▴ 670
0
votes
0
replies
941
views
Color of 2nd exon
GViz
4.1 years ago
underscore
• 0
1
vote
1
reply
1.4k
views
Gviz DataTrack data transformation on the fly
aggregation
Gviz
DataTrack
updated 4.1 years ago by
Robert Ivanek
▴ 750 • written 4.1 years ago by
Robert
▴ 10
0
votes
0
replies
1.1k
views
Modify y axis or add second y axis in Gviz
OverlayTrack
Gviz
4.1 years ago
Robert
▴ 10
4
votes
4
replies
3.3k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 4.2 years ago by
Pariksheet Nanda
▴ 120 • written 7.4 years ago by
wsciekly.maciek
▴ 10
0
votes
0
replies
925
views
Y axis Data Track GVIZ
GVIZ
4.3 years ago • updated 4.2 years ago
rbenel
▴ 50
1
vote
1
reply
2.3k
views
GVIZ on R not loading mm10 from UCSC
Gviz
4.4 years ago
RUser743
• 0
0
votes
3
replies
1.6k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
4.4 years ago
Hartorthereal
• 0
1
vote
3
replies
2.0k
views
Gradient dotplot
Gviz
4.4 years ago
sophieagger
• 0
0
votes
0
replies
1.3k
views
One read per line and other ordering of reads in Gviz
Gviz
4.5 years ago
pillailab1
• 0
0
votes
4
replies
2.0k
views
window parameter in DataTrack function with a single sample
Gviz
4.5 years ago • updated 4.3 years ago
rbenel
▴ 50
0
votes
1
reply
1.7k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 4.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
mar.pieraccioli
▴ 10
0
votes
4
replies
2.2k
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
updated 3.1 years ago by
James W. MacDonald
68k • written 4.6 years ago by
karlaarz
• 0
1
vote
3
replies
1.8k
views
Can't produce a generegiontrack from my txdb anymore
gviz
GenomicFeatures
4.6 years ago
A.J.
▴ 20
0
votes
0
replies
1.4k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
4.8 years ago
gdeniz
• 0
0
votes
0
replies
1.1k
views
Gviz - Fixed width of title panel on left
Gviz
4.8 years ago
rheery
• 0
0
votes
0
replies
1.2k
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
4.9 years ago
ginlucks
• 0
0
votes
3
replies
1.6k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
svenbioinf
• 0
0
votes
0
replies
1.4k
views
Gviz import lor reads from bam file
Gviz
longreads
4.9 years ago
ginlucks
• 0
0
votes
1
reply
1.2k
views
two tracks have the same axis
plot
Gviz
5.3 years ago
腾
• 0
0
votes
2
replies
1.6k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
5.3 years ago
Vaibhav
• 0
0
votes
2
replies
1.6k
views
Gviz vertical text labels
Gviz
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
Jake
▴ 90
0
votes
1
reply
1.5k
views
Gviz, keeping strand information while zooming in
Gviz
strand
5.4 years ago
svenbioinf
• 0
2
votes
2
replies
2.0k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
paul.jaschke
▴ 10
0
votes
1
reply
1.5k
views
Gviz package for plotting DMRs
Gviz
DMRs
updated 5.6 years ago by
Robert Ivanek
▴ 750 • written 5.6 years ago by
ayeshatariq78
• 0
0
votes
3
replies
3.3k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
5.6 years ago
roman.hillje
• 0
1
vote
3
replies
1.3k
views
Highlight uniq transcripts in Gviz
Gviz
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
peris_baba
• 0
0
votes
2
replies
1.6k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 5.8 years ago by
Robert Ivanek
▴ 750 • written 5.8 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.7k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 6.0 years ago by
Robert Ivanek
▴ 750 • written 6.0 years ago by
syliang
• 0
339 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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