Showing : gviz • reset
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190
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Simple confidence intervall Gviz
Gviz
6 months ago William • 0
0
votes
1
reply
1.6k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 8 months ago by • 0 • written 3.7 years ago by ▴ 60
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1
reply
604
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
updated 3 months ago by • 0 • written 11 months ago by • 0
0
votes
3
replies
1.8k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 13 months ago by • 0 • written 24 months ago by • 0
0
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3
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762
views
Gviz and custom database
Gviz
updated 15 months ago by 68k • written 15 months ago by • 0
1
vote
2
replies
2.2k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 16 months ago by ▴ 230 • written 2.5 years ago by ▴ 10
0
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1
reply
622
views
GC content track on GVIZ
Gviz
updated 19 months ago by 68k • written 19 months ago by • 0
1
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3
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2.5k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 22 months ago by ▴ 750 • written 4.3 years ago by • 0
0
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0
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777
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
22 months ago dbsgtk • 0
1
vote
0
replies
939
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
22 months ago yujin ▴ 10
1
vote
3
replies
1.1k
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 22 months ago by 16k • written 22 months ago by ▴ 10
0
votes
5
replies
2.8k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
2.8 years ago • updated 23 months ago Daniel E. Weeks ▴ 30
0
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2
replies
901
views
how to add annotation on individual track
Gviz
updated 2.3 years ago by ▴ 750 • written 2.3 years ago by ▴ 60
0
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0
replies
714
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.5 years ago Vinicius Henrique da Silva ▴ 40
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0
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1.1k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.6 years ago gilliangoobie • 0
0
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2
replies
1.9k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
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1
reply
1.6k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
3.2 years ago • updated 3.1 years ago rohitsatyam102 ▴ 20
4
votes
1
reply
2.4k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
1
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3
replies
2.7k
views
GVIZ giving error with loading hg38 genome
R Gviz
3.4 years ago RUser743 • 0
1
vote
2
replies
2.1k
views
Gviz and datatracks
Gviz
updated 3.5 years ago by • 0 • written 3.6 years ago by ▴ 670
0
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0
replies
838
views
Color of 2nd exon
GViz
3.6 years ago underscore • 0
1
vote
1
reply
1.3k
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 3.6 years ago by ▴ 750 • written 3.7 years ago by ▴ 10
0
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0
replies
952
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
3.7 years ago Robert ▴ 10
4
votes
4
replies
3.0k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 3.7 years ago by ▴ 120 • written 7.0 years ago by ▴ 10
0
votes
0
replies
840
views
Y axis Data Track GVIZ
GVIZ
3.9 years ago • updated 3.8 years ago rbenel ▴ 50
1
vote
1
reply
2.0k
views
GVIZ on R not loading mm10 from UCSC
Gviz
3.9 years ago RUser743 • 0
0
votes
3
replies
1.4k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
4.0 years ago • updated 3.9 years ago Hartorthereal • 0
1
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3
replies
1.8k
views
Gradient dotplot
Gviz
4.0 years ago sophieagger • 0
0
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0
replies
1.1k
views
One read per line and other ordering of reads in Gviz
Gviz
4.0 years ago pillailab1 • 0
0
votes
4
replies
1.8k
views
window parameter in DataTrack function with a single sample
Gviz
4.0 years ago • updated 3.9 years ago rbenel ▴ 50
0
votes
1
reply
1.5k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 4.0 years ago by 68k • written 4.1 years ago by ▴ 10
0
votes
4
replies
1.9k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 2.6 years ago by 68k • written 4.1 years ago by • 0
1
vote
3
replies
1.6k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
4.1 years ago A.J. ▴ 20
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0
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1.3k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
4.3 years ago gdeniz • 0
0
votes
0
replies
1.0k
views
Gviz - Fixed width of title panel on left
Gviz
4.3 years ago rheery • 0
0
votes
0
replies
1.0k
views
Gviz: set colors for UTRs
plot color Gviz utr
4.4 years ago ginlucks • 0
0
votes
3
replies
1.4k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
0
replies
1.3k
views
Gviz import lor reads from bam file
Gviz longreads
4.4 years ago ginlucks • 0
0
votes
1
reply
1.1k
views
two tracks have the same axis
plot Gviz
4.8 years ago 腾 • 0
0
votes
2
replies
1.4k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
4.8 years ago Vaibhav • 0
0
votes
2
replies
1.4k
views
Gviz vertical text labels
Gviz
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 90
0
votes
1
reply
1.3k
views
Gviz, keeping strand information while zooming in
Gviz strand
4.9 years ago svenbioinf • 0
2
votes
2
replies
1.7k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 5.0 years ago by 68k • written 5.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Gviz package for plotting DMRs
Gviz DMRs
updated 5.1 years ago by ▴ 750 • written 5.2 years ago by • 0
0
votes
3
replies
3.0k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
5.2 years ago roman.hillje • 0
1
vote
3
replies
1.2k
views
Highlight uniq transcripts in Gviz
Gviz
updated 5.2 years ago by ★ 4.0k • written 5.3 years ago by • 0
0
votes
2
replies
1.4k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 5.3 years ago by ▴ 750 • written 5.3 years ago by • 0
0
votes
2
replies
1.5k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 5.5 years ago by ▴ 750 • written 5.5 years ago by • 0
0
votes
4
replies
1.6k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 5.6 years ago by ▴ 140 • written 5.6 years ago by ▴ 30
0
votes
1
reply
1.3k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 5.6 years ago by ▴ 750 • written 6.1 years ago by ▴ 10
337 results • Page 1 of 7
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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …
Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k
> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…
Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k
The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…
Comment: voomLmFit fitted log-CPM values by Lina ▴ 10
Is the output from fitted(v) in the log2 CPM scale? or CPM scale?
Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
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A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
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