Showing : gviz • reset
1
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2
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1.0k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 28 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
votes
1
reply
217
views
GC content track on GVIZ
Gviz
updated 3 months ago by 66k • written 3 months ago by • 0
1
vote
3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 6 months ago by ▴ 730 • written 3.0 years ago by • 0
0
votes
0
replies
372
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
6 months ago dbsgtk • 0
1
vote
0
replies
465
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
6 months ago yujin ▴ 10
1
vote
3
replies
627
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 6 months ago by 16k • written 6 months ago by ▴ 10
0
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5
replies
1.8k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30
0
votes
3
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790
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 8 months ago by ▴ 730 • written 8 months ago by • 0
0
votes
2
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562
views
how to add annotation on individual track
Gviz
updated 12 months ago by ▴ 730 • written 12 months ago by ▴ 50
0
votes
0
replies
415
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
14 months ago Vinicius Henrique da Silva ▴ 40
0
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0
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648
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
15 months ago gilliangoobie • 0
0
votes
2
replies
1.2k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 22 months ago by 66k • written 22 months ago by • 0
0
votes
1
reply
987
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
22 months ago rohitsatyam102 ▴ 20
2
votes
1
reply
1.4k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 23 months ago by 66k • written 23 months ago by • 0
1
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3
replies
1.8k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.1 years ago RUser743 • 0
1
vote
2
replies
1.4k
views
Gviz and datatracks
Gviz
updated 2.2 years ago by • 0 • written 2.3 years ago by ▴ 670
0
votes
0
replies
553
views
Color of 2nd exon
GViz
2.3 years ago underscore • 0
1
vote
1
reply
870
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 2.3 years ago by ▴ 730 • written 2.4 years ago by ▴ 10
0
votes
0
replies
628
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
2.4 years ago Robert ▴ 10
4
votes
4
replies
2.3k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 2.4 years ago by ▴ 120 • written 5.7 years ago by ▴ 10
0
votes
0
replies
859
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
0
votes
0
replies
609
views
Y axis Data Track GVIZ
GVIZ
2.6 years ago • updated 2.5 years ago rbenel ▴ 40
1
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1
reply
1.5k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.6 years ago RUser743 • 0
0
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3
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938
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.6 years ago Hartorthereal • 0
1
vote
3
replies
1.3k
views
Gradient dotplot
Gviz
2.7 years ago sophieagger • 0
0
votes
0
replies
858
views
One read per line and other ordering of reads in Gviz
Gviz
2.7 years ago pillailab1 • 0
0
votes
4
replies
1.2k
views
window parameter in DataTrack function with a single sample
Gviz
2.7 years ago • updated 2.6 years ago rbenel ▴ 40
0
votes
1
reply
1.0k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.7 years ago by 66k • written 2.8 years ago by ▴ 10
0
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4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 16 months ago by 66k • written 2.8 years ago by • 0
1
vote
3
replies
1.1k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
2.8 years ago A.J. ▴ 20
0
votes
0
replies
875
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.0 years ago gdeniz • 0
0
votes
0
replies
776
views
Gviz - Fixed width of title panel on left
Gviz
3.0 years ago rheery • 0
0
votes
0
replies
686
views
Gviz: set colors for UTRs
plot color Gviz utr
3.1 years ago ginlucks • 0
0
votes
3
replies
1.1k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.1 years ago by 66k • written 3.1 years ago by • 0
0
votes
0
replies
996
views
Gviz import lor reads from bam file
Gviz longreads
3.1 years ago ginlucks • 0
0
votes
1
reply
765
views
two tracks have the same axis
plot Gviz
3.5 years ago 腾 • 0
0
votes
2
replies
1.0k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
3.5 years ago Vaibhav • 0
0
votes
2
replies
1.0k
views
Gviz vertical text labels
Gviz
updated 3.6 years ago by 66k • written 3.6 years ago by ▴ 90
0
votes
1
reply
894
views
Gviz, keeping strand information while zooming in
Gviz strand
3.6 years ago svenbioinf • 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.7 years ago by 66k • written 3.7 years ago by ▴ 10
0
votes
1
reply
915
views
Gviz package for plotting DMRs
Gviz DMRs
updated 3.8 years ago by ▴ 730 • written 3.9 years ago by • 0
0
votes
3
replies
2.1k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
3.9 years ago roman.hillje • 0
1
vote
3
replies
801
views
Highlight uniq transcripts in Gviz
Gviz
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
2
replies
1.0k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.0 years ago by ▴ 730 • written 4.0 years ago by • 0
0
votes
2
replies
1.0k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.2 years ago by ▴ 730 • written 4.2 years ago by • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.3 years ago by ▴ 140 • written 4.3 years ago by ▴ 30
0
votes
1
reply
893
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.3 years ago by ▴ 730 • written 4.8 years ago by ▴ 10
1
vote
5
replies
1.0k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.3 years ago by 66k • written 4.3 years ago by ▴ 10
0
votes
2
replies
858
views
BioMart webservice returned an invalid result
gviz biomart
4.3 years ago adrian86 • 0
0
votes
2
replies
885
views
I am wondering whether Gviz can support a plot like ggridges
Gviz
4.5 years ago Guandong Shang ▴ 40
50 results • Page 1 of 1
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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue by Tahirah • 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
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how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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