Showing : heatmaps • reset
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 6 months ago by ▴ 780 • written 6 months ago by • 0
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827
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edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by 50k • written 6 months ago by • 0
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3
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578
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Installing Gpart
gpart heat heatmaps
updated 6 months ago by 65k • written 6 months ago by • 0
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2
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614
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Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 10 months ago by • 0
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507
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 13 months ago by ▴ 80 • written 13 months ago by ▴ 10
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625
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 13 months ago by ★ 4.1k • written 14 months ago by • 0
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2
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884
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago shuangshuang • 0
0
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0
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815
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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631
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struggling to create a heatmap
DESeq2 heatmaps
updated 15 months ago by ★ 4.1k • written 15 months ago by ▴ 10
2
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3
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978
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 15 months ago by ▴ 10
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621
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
15 months ago Sooni ▴ 10
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5
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3.2k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 14 months ago by 50k • written 16 months ago by ▴ 10
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5
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1.6k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
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2.1k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 41k • written 19 months ago by • 0
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3
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1.1k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 19 months ago by 65k • written 19 months ago by • 0
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1.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 20 months ago by • 0
1
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987
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 22 months ago by 65k • written 22 months ago by • 0
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3.8k
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Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
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3
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1.3k
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Persisting error in making a heatmap
heatmaps gplots
22 months ago beslinail • 0
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775
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Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
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1.1k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
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2.4k
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Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
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835
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 30
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1.3k
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DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
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720
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
26 results • Page 1 of 1
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Comment: Postdoctoral Position in Bioinformatics - Mainz, Germany by Jammie • 0
[Online kasiinod][1] pakuvad mängijatele võimalust nautida põnevat hasartmängukogemust otse oma arvuti või mobiilseadme kaudu. Need kasiino…
Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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