Showing : igraph • reset
1
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
12 months ago • updated 11 months ago Arindam ▴ 80
0
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1
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997
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GRanges list convert into igraph format
GRanges igraph
updated 2.6 years ago by ▴ 760 • written 2.6 years ago by ▴ 670
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0
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764
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coexpression networks
WGCNA igraph
2.8 years ago María José • 0
0
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1
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1.7k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
updated 5 months ago by • 0 • written 4.7 years ago by • 0
0
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2
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3.6k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
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1
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2.1k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 4.1 years ago by 53k • written 6.4 years ago by • 0
0
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2
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1.8k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
6.4 years ago Samuel Lee • 0
2
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5
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2.3k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 6.5 years ago by ★ 29k • written 6.5 years ago by ▴ 60
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1
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1.2k
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
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1.3k
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igraph PoTRA error
graph pathways igraph
7.5 years ago genomic8328 ▴ 10
0
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2
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4.0k
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get vertex xy coords from igraph mst plot
igraph
7.9 years ago Andrew Box ▴ 10
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1
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1.8k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
8.1 years ago lljotall ▴ 10
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2
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2.3k
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Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 8.3 years ago by • 0 • written 9.8 years ago by • 0
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0
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1.9k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
8.6 years ago jan.soderman • 0
0
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0
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1.3k
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
9.3 years ago Abhishek Pratap ▴ 190
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2
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1.5k
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taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 9.3 years ago by ▴ 470 • written 9.3 years ago by ▴ 40
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0
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1.4k
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read tree fails for large trees
RamiGO R gene ontology igraph
9.6 years ago bkellman • 0
2
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4
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3.2k
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getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.7 years ago by 16k • written 9.7 years ago by ▴ 40
0
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1
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2.2k
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Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.8 years ago by • 0 • written 9.8 years ago by ▴ 10
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4
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2.5k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 10.1 years ago by ▴ 20 • written 10.1 years ago by ▴ 130
20 results • Page 1 of 1
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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …
Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k
> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…
Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k
The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…
Comment: voomLmFit fitted log-CPM values by Lina ▴ 10
Is the output from fitted(v) in the log2 CPM scale? or CPM scale?
Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
Votes
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
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