Showing : igraph • reset
1
vote
2
replies
403
views
KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
3 months ago • updated 9 weeks ago Arindam ▴ 80
0
votes
1
reply
804
views
GRanges list convert into igraph format
GRanges igraph
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 670
0
votes
0
replies
670
views
coexpression networks
WGCNA igraph
2.1 years ago María José • 0
0
votes
0
replies
1.3k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
4.0 years ago Chantel • 0
0
votes
2
replies
3.3k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.0 years ago by 25k • written 5.0 years ago by • 0
0
votes
1
reply
1.8k
views
igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.4 years ago by 52k • written 5.7 years ago by • 0
0
votes
2
replies
1.5k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
5.7 years ago Samuel Lee • 0
2
votes
5
replies
1.8k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 60
0
votes
1
reply
1.1k
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
igraph PoTRA error
graph pathways igraph
6.8 years ago genomic8328 ▴ 10
0
votes
2
replies
3.6k
views
get vertex xy coords from igraph mst plot
igraph
7.2 years ago Andrew Box ▴ 10
1
vote
1
reply
1.6k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
7.4 years ago lljotall ▴ 10
0
votes
2
replies
2.2k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 7.5 years ago by • 0 • written 9.0 years ago by • 0
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.9 years ago jan.soderman • 0
0
votes
0
replies
1.1k
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
8.6 years ago Abhishek Pratap ▴ 190
2
votes
2
replies
1.4k
views
taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.6 years ago by ▴ 470 • written 8.6 years ago by ▴ 40
0
votes
0
replies
1.3k
views
read tree fails for large trees
RamiGO R gene ontology igraph
8.9 years ago bkellman • 0
2
votes
4
replies
3.0k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 40
0
votes
1
reply
2.1k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.1 years ago by • 0 • written 9.1 years ago by ▴ 10
0
votes
4
replies
2.3k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.4 years ago by ▴ 20 • written 9.4 years ago by ▴ 130
20 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
WEHI, Melbourne, Australia, 21 minutes ago
Pakistan, 33 minutes ago
Germany, 3 hours ago
Barcelona/Universitat Pompeu Fabra, 3 hours ago
The city by the bay, 4 hours ago
Traffic: 414 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6