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igraph
•
reset
0
votes
2
replies
1.8k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
written 4.8 years ago by
Chantel
• 0
1
vote
2
replies
783
views
KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
13 months ago • updated 12 months ago
Arindam
▴ 80
0
votes
1
reply
1.0k
views
GRanges list convert into igraph format
GRanges
igraph
updated 2.8 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.8 years ago by
Bogdan
▴ 670
0
votes
0
replies
782
views
coexpression networks
WGCNA
igraph
2.9 years ago
María José
• 0
0
votes
2
replies
3.6k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update
Phyloseq
igraph
phangorn
Tutorial
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
crgarcia
• 0
0
votes
1
reply
2.1k
views
igraph clustering for gene coexpression network
igraph
network
gene corexpression
rna-seq
updated 4.2 years ago by
Gordon Smyth
53k • written 6.6 years ago by
aiswaryabioinfo
• 0
0
votes
2
replies
1.9k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
6.6 years ago
Samuel Lee
• 0
2
votes
5
replies
2.4k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater
scran
igraph
scRNA-Seq
rots
updated 6.7 years ago by
Aaron Lun
★ 29k • written 6.7 years ago by
hamza_karakurt
▴ 60
0
votes
1
reply
1.3k
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
genomic8328
▴ 10
0
votes
0
replies
1.3k
views
igraph PoTRA error
graph
pathways
igraph
7.6 years ago
genomic8328
▴ 10
0
votes
2
replies
4.0k
views
get vertex xy coords from igraph mst plot
igraph
8.0 years ago
Andrew Box
▴ 10
1
vote
1
reply
1.8k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN
igraph
8.2 years ago
lljotall
▴ 10
0
votes
2
replies
2.4k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 8.4 years ago by
johnheath346
• 0 • written 9.9 years ago by
duncanjamesmurray01
• 0
0
votes
0
replies
2.0k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
8.8 years ago
jan.soderman
• 0
0
votes
0
replies
1.3k
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi
network analysis
igraph
9.4 years ago
Abhishek Pratap
▴ 190
2
votes
2
replies
1.6k
views
taking intersection between 6 networks by graph.intersect
igraph
software error
adjacency matrix
updated 9.4 years ago by
Paul Shannon
▴ 470 • written 9.5 years ago by
Angel
▴ 40
0
votes
0
replies
1.4k
views
read tree fails for large trees
RamiGO
R
gene ontology
igraph
9.7 years ago
bkellman
• 0
2
votes
4
replies
3.2k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
Angel
▴ 40
0
votes
1
reply
2.3k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM
igraph
updated 10.0 years ago by
andrew
• 0 • written 10.0 years ago by
sirintra
▴ 10
0
votes
4
replies
2.5k
views
Package "geNetClassifier": is this an "igraph' error?
software error
geNet
igraph
genetclassifier
updated 10.2 years ago by
saibar
▴ 20 • written 10.2 years ago by
alakatos
▴ 130
20 results • Page
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Answer: Important: Bioconductor Release 3.22 Delayed
by
shepherl
4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table
by
Francesc
• 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
Comment: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction
by
picasa1983
• 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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