Showing : igraph • reset
1
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
6 months ago • updated 5 months ago Arindam ▴ 80
0
votes
1
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886
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GRanges list convert into igraph format
GRanges igraph
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by ▴ 670
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0
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712
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coexpression networks
WGCNA igraph
2.3 years ago María José • 0
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0
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1.5k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
4.2 years ago Chantel • 0
0
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2
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3.4k
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Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
0
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1
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2.0k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.6 years ago by 52k • written 6.0 years ago by • 0
0
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2
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1.7k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
6.0 years ago Samuel Lee • 0
2
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5
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2.0k
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Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 60
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1
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1.1k
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 10
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0
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1.2k
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igraph PoTRA error
graph pathways igraph
7.0 years ago genomic8328 ▴ 10
0
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2
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3.8k
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get vertex xy coords from igraph mst plot
igraph
7.4 years ago Andrew Box ▴ 10
1
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1
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1.7k
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QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
7.6 years ago lljotall ▴ 10
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2
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2.2k
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Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 7.8 years ago by • 0 • written 9.3 years ago by • 0
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0
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1.8k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
8.2 years ago jan.soderman • 0
0
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0
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1.2k
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
8.8 years ago Abhishek Pratap ▴ 190
2
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2
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1.4k
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taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.9 years ago by ▴ 470 • written 8.9 years ago by ▴ 40
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0
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1.3k
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read tree fails for large trees
RamiGO R gene ontology igraph
9.1 years ago bkellman • 0
2
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4
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3.1k
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getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.2 years ago by 16k • written 9.2 years ago by ▴ 40
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1
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2.1k
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Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.4 years ago by • 0 • written 9.4 years ago by ▴ 10
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4
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2.3k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.7 years ago by ▴ 20 • written 9.7 years ago by ▴ 130
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Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
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