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igraph
•
reset
0
votes
2
replies
1.9k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
written 4.9 years ago by
Chantel
• 0
1
vote
2
replies
821
views
KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
14 months ago • updated 13 months ago
Arindam
▴ 80
0
votes
1
reply
1.1k
views
GRanges list convert into igraph format
GRanges
igraph
updated 2.8 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.8 years ago by
Bogdan
▴ 670
0
votes
0
replies
797
views
coexpression networks
WGCNA
igraph
3.0 years ago
María José
• 0
0
votes
2
replies
3.7k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update
Phyloseq
igraph
phangorn
Tutorial
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
crgarcia
• 0
0
votes
1
reply
2.2k
views
igraph clustering for gene coexpression network
igraph
network
gene corexpression
rna-seq
updated 4.3 years ago by
Gordon Smyth
53k • written 6.6 years ago by
aiswaryabioinfo
• 0
0
votes
2
replies
1.9k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
6.6 years ago
Samuel Lee
• 0
2
votes
5
replies
2.6k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater
scran
igraph
scRNA-Seq
rots
updated 6.7 years ago by
Aaron Lun
★ 29k • written 6.7 years ago by
hamza_karakurt
▴ 60
0
votes
1
reply
1.3k
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
genomic8328
▴ 10
0
votes
0
replies
1.4k
views
igraph PoTRA error
graph
pathways
igraph
7.7 years ago
genomic8328
▴ 10
0
votes
2
replies
4.1k
views
get vertex xy coords from igraph mst plot
igraph
8.1 years ago
Andrew Box
▴ 10
1
vote
1
reply
1.8k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN
igraph
8.3 years ago
lljotall
▴ 10
0
votes
2
replies
2.4k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 8.5 years ago by
johnheath346
• 0 • written 9.9 years ago by
duncanjamesmurray01
• 0
0
votes
0
replies
2.0k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
8.8 years ago
jan.soderman
• 0
0
votes
0
replies
1.3k
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi
network analysis
igraph
9.5 years ago
Abhishek Pratap
▴ 190
2
votes
2
replies
1.6k
views
taking intersection between 6 networks by graph.intersect
igraph
software error
adjacency matrix
updated 9.5 years ago by
Paul Shannon
▴ 470 • written 9.5 years ago by
Angel
▴ 40
0
votes
0
replies
1.4k
views
read tree fails for large trees
RamiGO
R
gene ontology
igraph
9.8 years ago
bkellman
• 0
2
votes
4
replies
3.3k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
Angel
▴ 40
0
votes
1
reply
2.3k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM
igraph
updated 10.0 years ago by
andrew
• 0 • written 10.0 years ago by
sirintra
▴ 10
0
votes
4
replies
2.6k
views
Package "geNetClassifier": is this an "igraph' error?
software error
geNet
igraph
genetclassifier
updated 10.3 years ago by
saibar
▴ 20 • written 10.3 years ago by
alakatos
▴ 130
20 results • Page
1 of 1
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Replies
Answer: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
Guido Hooiveld
★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbn…
Comment: Getting a large intercept with DESeq2
by
Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo
by
shepherl
4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer
by
shepherl
4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Answer: Error installing Seqinfo
by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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Guido Hooiveld
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