Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
missMethyl
•
reset
0
votes
0
replies
142
views
gsameth GSA: probe annotation to multiple genes
missMethyl
gsameth
10 weeks ago • updated 9 weeks ago
nurkenber
• 0
0
votes
1
reply
247
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl
DMRcate
updated 10 weeks ago by
James W. MacDonald
68k • written 11 weeks ago by
maximuscfyeung
• 0
0
votes
2
replies
356
views
MissMethyl failed to use gometh function for EPICv2
missMethyl
EPICv2manifest
updated 11 weeks ago by
James W. MacDonald
68k • written 11 weeks ago by
maximuscfyeung
• 0
0
votes
2
replies
677
views
DMPs enrichment for MOUSE DNA methylation array
minfi
mCSEA
missme
missMethyl
updated 7 months ago by
nrenke
• 0 • written 7 months ago by
Lucie
• 0
1
vote
3
replies
1.8k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
12 months ago • updated 6 months ago
s.malik
• 0
0
votes
1
reply
878
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 19 months ago by
Tim Peters
▴ 230 • written 19 months ago by
b.curran
• 0
0
votes
2
replies
888
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 12 months ago by
CHEN
• 0 • written 22 months ago by
Saanchi
• 0
1
vote
1
reply
864
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 23 months ago by
belinda.phipson
▴ 40 • written 23 months ago by
Grace
• 0
0
votes
1
reply
774
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
23 months ago
Grace
• 0
0
votes
0
replies
545
views
goMeth
missMethyl
2.0 years ago
anmolanp
▴ 10
2
votes
6
replies
1.4k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 2.0 years ago by
belinda.phipson
▴ 40 • written 2.0 years ago by
Joana
• 0
2
votes
3
replies
1.7k
views
GSEA for paired methylation data
missMethyl
GSEA
minfi
methylGSA
updated 2.2 years ago by
belinda.phipson
▴ 40 • written 2.2 years ago by
Lukas
• 0
0
votes
6
replies
1.7k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 3.7 years ago by
Jovana Maksimovic
▴ 20 • written 4.7 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 3.7 years ago by
Jovana Maksimovic
▴ 20 • written 4.6 years ago by
stewart999
▴ 10
1
vote
2
replies
2.3k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
moldach
▴ 20
0
votes
0
replies
1.1k
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
6.6 years ago
peter.fransquet
• 0
0
votes
0
replies
1.1k
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl
gsameth
6.7 years ago
owen.whitley
▴ 10
0
votes
1
reply
1.7k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl
diffvar
design matrix
limma
block
updated 6.8 years ago by
lhuang7
▴ 50 • written 7.8 years ago by
Simone
▴ 190
0
votes
0
replies
1.1k
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.9 years ago
RC
• 0
0
votes
0
replies
1.2k
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.9 years ago
Taub, Margaret
▴ 10
0
votes
2
replies
1.7k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 7.7 years ago by
Gordon Smyth
52k • written 7.9 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.5k
views
Details of gene names in DE
missmethyl
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
r.clifford
• 0
0
votes
1
reply
1.5k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 8.1 years ago by
belinda.phipson
▴ 40 • written 8.1 years ago by
evani.radiya.dixit
• 0
1
vote
2
replies
1.8k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology
GO
overrepresentation analysis
missmethyl
gostats
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
graggsd
• 0
1
vote
3
replies
3.4k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
9.0 years ago
philipp24
▴ 30
3
votes
3
replies
4.0k
views
missMethyl: Gene ontology analysis
missMethyl
9.0 years ago
philipp24
▴ 30
0
votes
0
replies
1.4k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
9.0 years ago
philipp24
▴ 30
27 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl site unresponsive via biomaRt
by
Mike Smith
★ 6.6k
I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…
Comment: pairedGSEA input files
by
shdam
▴ 10
Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …
Comment: Unused arguments error without used arguments in GSVA?
by
michaelarringtony
• 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Comment: EdgeR Biological CVs
by
jeffreestary
• 0
By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…
Comment: How to reverse complement some elements of a DNAStringSet
by
shrill.asp.tufl
• 0
Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …
Votes
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Awards
• All
Popular Question
to
mdeea123
▴ 10
Popular Question
to
GA
▴ 10
Popular Question
to
Elizabeth
• 0
Popular Question
to
Kent
• 0
Popular Question
to
Gordon Smyth
52k
Locations
• All
Germany,
5 minutes ago
Germany,
18 minutes ago
Japan,
32 minutes ago
EMBL Heidelberg,
59 minutes ago
Pakistan,
1 hour ago
Traffic: 812 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6