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0
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10
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ChAMP installation issue
Cha
ChAMP
1 hour ago
e1271094
• 0
0
votes
0
replies
10
views
Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
2 hours ago
Lupe
• 0
0
votes
0
replies
23
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
13 hours ago
aogunbaw
• 0
0
votes
0
replies
28
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
16 hours ago
Seungmin
• 0
0
votes
0
replies
40
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
1 day ago
Matthew Thornton
▴ 350
0
votes
3
replies
7.7k
views
SingleR Label.Ont
SingleR
updated 1 day ago by
Denis
• 0 • written 8 months ago by
saeed.khalili
• 0
0
votes
0
replies
44
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
1 day ago
315005358
• 0
0
votes
1
reply
77
views
error
Biobase
2 days ago
NATASHA
• 0
0
votes
1
reply
74
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 2 days ago by
ATpoint
★ 4.1k • written 2 days ago by
sajadahmad41454
• 0
1
vote
2
replies
186
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq
duplicateCorrelation
limma
voom
4 days ago • updated 3 days ago
Dylan.Sheerin
• 0
0
votes
0
replies
38
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
3 days ago
neilzhao
▴ 30
1
vote
0
replies
285
views
News:
Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 3 days ago
shepherl
3.9k
0
votes
1
reply
69
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 3 days ago by
ATpoint
★ 4.1k • written 3 days ago by
sajadahmad41454
• 0
3
votes
4
replies
472
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 4 days ago by
Mike Smith
★ 6.5k • written 7 days ago by
robersy
• 0
2
votes
7
replies
281
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
4 days ago • updated 1 day ago
sajadahmad41454
• 0
0
votes
0
replies
43
views
Treeio as.treedata function seq lenght error
treeio
5 days ago
nromerov
• 0
1
vote
1
reply
154
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
zzrammal
• 0
3
votes
10
replies
370
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
updated 2 days ago by
James W. MacDonald
65k • written 5 days ago by
Abbey
• 0
1
vote
1
reply
122
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
e1271094
• 0
0
votes
1
reply
80
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 5 days ago by
shepherl
3.9k • written 5 days ago by
cyril.dalmasso
• 0
0
votes
0
replies
61
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
6 days ago
Dinesh
• 0
3
votes
5
replies
236
views
Help with running egsea()
EGSEA
6 days ago • updated 5 days ago
Chris
• 0
3
votes
1
reply
117
views
How to save the DEXSeq results
DEXSeq
updated 6 days ago by
Michael Love
42k • written 6 days ago by
Sara
• 0
3
votes
4
replies
250
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 5 days ago by
Gordon Smyth
50k • written 7 days ago by
Chris
• 0
0
votes
3
replies
164
views
Couldn't connect to server while using "pathways"
graphite
updated 6 days ago by
Michael Love
42k • written 6 days ago by
fduguchunhui
• 0
1
vote
1
reply
110
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 6 days ago by
Michael Love
42k • written 6 days ago by
mat149
▴ 70
1
vote
1
reply
152
views
Handling multiple differential expression comparisons
DESeq2
updated 7 days ago by
Michael Love
42k • written 9 days ago by
Zainab
▴ 10
2
votes
2
replies
193
views
fgsea significant result
fgsea
8 days ago • updated 7 days ago
Chris
• 0
0
votes
40
replies
2.9k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 2 days ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
0
votes
6
replies
253
views
Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 9 days ago by
swbarnes2
★ 1.4k • written 10 days ago by
arfranco
▴ 130
1
vote
2
replies
367
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 9 days ago by
Gordon Smyth
50k • written 9 days ago by
Kim
• 0
2
votes
3
replies
215
views
package goseq seems to be not available on the latest version of R
goseq
updated 6 days ago by
Gordon Smyth
50k • written 9 days ago by
Patrycja
▴ 20
2
votes
3
replies
218
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 7 days ago by
ATpoint
★ 4.1k • written 9 days ago by
Reza
• 0
0
votes
0
replies
102
views
dba.plotProfile() plotting and interpretation
DiffBind
9 days ago
Henry
▴ 10
0
votes
1
reply
153
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 10 days ago by
Gordon Smyth
50k • written 10 days ago by
z_bahari
• 0
0
votes
1
reply
136
views
Gene-by-sample covariates in limma
Metabolomics
limma
updated 10 days ago by
Gordon Smyth
50k • written 10 days ago by
c53aba27
• 0
4
votes
2
replies
592
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
10 days ago • updated 6 days ago
gene_bioconductor
▴ 10
0
votes
0
replies
80
views
flowStats for CyTOF
flowStats
10 days ago
tholmes
• 0
0
votes
2
replies
138
views
DESeq2 v1.35.0
DESeq2
updated 10 days ago by
Michael Love
42k • written 10 days ago by
Espresso
• 0
0
votes
0
replies
76
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
10 days ago
yvonneh
• 0
0
votes
0
replies
71
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
10 days ago
Ian D.
▴ 70
0
votes
1
reply
110
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 10 days ago by
4r-rtg
• 0
0
votes
4
replies
315
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 1 day ago by
Ziliang
• 0 • written 11 days ago by
Ian D.
▴ 70
0
votes
2
replies
182
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
11 days ago • updated 10 days ago
kcarey
• 0
0
votes
3
replies
185
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 10 days ago by
ATpoint
★ 4.1k • written 11 days ago by
james.zhang20
• 0
1
vote
3
replies
274
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 4 days ago by
ATpoint
★ 4.1k • written 11 days ago by
angelathuynh5
• 0
4
votes
0
replies
115
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
11 days ago
shepherl
3.9k
0
votes
0
replies
124
views
Empty table plot using plotGseaTable()
fgsea
11 days ago • updated 9 days ago
Chris
• 0
0
votes
3
replies
197
views
Store output of matchPWM()
biostrings
Biostrings
updated 11 days ago by
James W. MacDonald
65k • written 11 days ago by
mat149
▴ 70
0
votes
3
replies
279
views
log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 11 days ago by
Michael Love
42k • written 12 days ago by
HAK
• 0
190 results • Page
1 of 4
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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