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updated 11 days ago by ★ 4.1k • written 11 days ago by • 0
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12 days ago • updated 11 days ago Dylan.Sheerin • 0
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11 days ago neilzhao ▴ 30
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13 days ago • updated 9 days ago sajadahmad41454 • 0
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13 days ago nromerov • 0
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13 days ago • updated 8 days ago zzrammal • 0
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updated 13 days ago by 3.9k • written 13 days ago by • 0
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need help with Diffbind multiple groups
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14 days ago Dinesh • 0
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14 days ago • updated 13 days ago Chris ▴ 10
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15 days ago • updated 5 days ago Chris ▴ 10
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updated 14 days ago by 42k • written 15 days ago by • 0
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updated 14 days ago by 42k • written 14 days ago by ▴ 70
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16 days ago • updated 15 days ago Chris ▴ 10
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updated 17 days ago by ★ 1.4k • written 18 days ago by ▴ 130
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17 days ago Henry ▴ 10
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updated 18 days ago by 50k • written 18 days ago by • 0
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18 days ago • updated 14 days ago gene_bioconductor ▴ 10
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18 days ago tholmes • 0
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updated 18 days ago by 42k • written 18 days ago by • 0
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18 days ago yvonneh • 0
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18 days ago Ian D. ▴ 70
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19 days ago • updated 18 days ago kcarey • 0
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updated 18 days ago by ★ 4.1k • written 19 days ago by • 0
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updated 13 days ago by ★ 4.1k • written 19 days ago by • 0
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19 days ago shepherl 3.9k
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19 days ago • updated 17 days ago Chris ▴ 10
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updated 19 days ago by 42k • written 20 days ago by • 0
1
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2
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20 days ago • updated 19 days ago Yveto • 0
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1
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266
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How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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updated 20 days ago by 66k • written 21 days ago by • 0
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20 days ago Chris ▴ 10
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160
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Fold change calculation in Diffbind vs. DESEQ2?
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21 days ago • updated 18 days ago Aurora • 0
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140
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Padj "NA" with thousands of low count although the raw read counts are quite large
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updated 20 days ago by 42k • written 21 days ago by • 0
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20 days ago Maria Doyle ▴ 70
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126
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updated 20 days ago by 3.9k • written 21 days ago by • 0
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1
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141
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putting my own expression data in deseq2
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updated 20 days ago by ★ 4.1k • written 21 days ago by • 0
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Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
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21 days ago Chris ▴ 10
1,744 results • Page 2 of 35
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
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