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4
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DiffBind can't find a DAR
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8 months ago Mengjun • 0
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3
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8 months ago ktz • 0
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8 months ago info ▴ 10
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2
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Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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updated 8 months ago by 68k • written 8 months ago by • 0
0
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1
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877
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News: List of Deprecated Packages for Bioc3.20
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8 months ago irenejoshi07 0
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8 months ago Arctic • 0
0
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1
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DESeq2
org.Mmu.eg.db DESeq2 TimeCourse DMSOvsdrug RNASeqData
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
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733
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 8 months ago by 68k • written 8 months ago by • 0
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updated 8 months ago by ★ 5.0k • written 9 months ago by • 0
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8 months ago Sofia • 0
1
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1
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ComBat with repeated measures
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updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
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News: List of Deprecated Packages for Bioc3.21
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8 months ago Haggu 10
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Improving performance of edgeR and limma while adjusting for multiple confounders
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Merging EPICV1 and V2 betas
minfiDataEPIC minfi
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Error in cnetplot
enrichplot clusterProfiler
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getBM from biomaRt inconsistencies found with .gtf files across multiple species
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4
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Explanation for ROAST results
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written 8 months ago by • 0
1
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1
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440
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Merging annotation with differential expression output
annotation RNASeqData
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0
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Annotation package for Manduca sexta
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8 months ago GA ▴ 10
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8 months ago kagodwi2 • 0
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4
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Ensembl site unresponsive via biomaRt
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372
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best way to grouping GSM belonging to different datasets (with different platforms) and compare differential gene expression
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2
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updated 9 months ago by 53k • written 9 months ago by ▴ 10
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10
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0
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0
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1
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2
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0
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9 months ago GT • 0
1
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2
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9 months ago • updated 6 months ago Erika • 0
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9 months ago DavideSant • 0
2
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2
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9 months ago Elizabeth • 0
1
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8
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9 months ago • updated 8 months ago Luca • 0
0
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1
reply
486
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updated 9 months ago by 68k • written 9 months ago by • 0
1
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3
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Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malformed error
signac AnnotationHub
written 9 months ago by ▴ 110
0
votes
1
reply
441
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RiboProfiling RiboSeq
updated 9 months ago by 4.2k • written 9 months ago by • 0
46,696 results • Page 7 of 934
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
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The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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