0
votes
1
reply
488
views
Discrepancy between Excel TPP-TR reported values and the Melt Curve reported values
TPP
updated 9 months ago by 68k • written 9 months ago by • 0
1
vote
3
replies
1.2k
views
Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malformed error
signac AnnotationHub
written 9 months ago by ▴ 110
0
votes
1
reply
445
views
Transcript ID Mismatch in riboWaltz Annotation Table
RiboProfiling RiboSeq
updated 9 months ago by 4.2k • written 9 months ago by • 0
0
votes
4
replies
890
views
Using tximport for kallisto aligned TOIL data
kallisto tximport TOIL
9 months ago Nicholas • 0
0
votes
1
reply
579
views
Reading gene expression data in GPR format and converting it to xlsx format
BiocWorkflowTools BiomedicalInformatics GeneExpression
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
0
replies
297
views
Simple confidence intervall Gviz
Gviz
9 months ago William • 0
1
vote
3
replies
21k
views
Warning message---BiocManager::install
BiocManager::install
written 4.4 years ago by • 0
0
votes
2
replies
655
views
org.Hs.eg.db issue
org.Hs.eg.db
written 11 months ago by • 0
0
votes
2
replies
768
views
Removing UTR from GTF for gene quantification
edgeR DESeq2
updated 9 months ago by 43k • written 9 months ago by ▴ 20
1
vote
2
replies
1.1k
views
Differential expression of proteins using somascan data
somascan limma
written 9 months ago by • 0
0
votes
1
reply
675
views
library org.Hs.eg.db failing to install
org.Hs.eg.db
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
1
reply
470
views
DESeq use in lipidomic analysis
DESeq2 package Lipidomics
updated 9 months ago by 43k • written 9 months ago by • 0
0
votes
2
replies
608
views
Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
hta20transcriptcluster.db org.Sc.sgd.db HTA2.0 MicroRNAArrayData
9 months ago Yao Lipu • 0
0
votes
1
reply
461
views
Is it possible to model DNA methylation as a dose response in edgeR?
edgeR
updated 9 months ago by 53k • written 9 months ago by • 0
0
votes
0
replies
381
views
DiffBind recommendation on using IgG bams
peakcalling DiffBind
9 months ago Harish • 0
0
votes
2
replies
692
views
Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
1
reply
385
views
DepMap data mismatch
depmap
updated 9 months ago by 1.6k • written 9 months ago by ▴ 30
0
votes
4
replies
2.9k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
written 6.4 years ago by • 0
0
votes
3
replies
1.0k
views
how many significant figures are there in DESeq2 output
DESeq2
updated 9 months ago by ★ 5.0k • written 9 months ago by ▴ 180
0
votes
0
replies
364
views
News: GSEA in R/Bioconductor course
GSEABenchmarkeR pairedGSEA GeneSetEnrichment
9 months ago info ▴ 10
0
votes
2
replies
544
views
graper 1.22 Build is Broken
bug graper offtopic
updated 9 months ago by 4.2k • written 9 months ago by • 0
0
votes
4
replies
797
views
orgDB
IlluminaDataTestFiles
updated 9 months ago by • 0 • written 9 months ago by • 0
1
vote
1
reply
2.0k
views
GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct" and "unused arguments (exprsData = as.matrix(rna_seq_sub), gset.idx…
GSVA
updated 9 months ago by ★ 5.0k • written 9 months ago by • 0
0
votes
4
replies
1.4k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 9 months ago by • 0 • written 9 months ago by • 0
0
votes
1
reply
544
views
Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
9 months ago Adam • 0
0
votes
1
reply
86
views
Spam: '"><svg/onload=prompt(5);>{{7*7}}
org.Sc.sgd.db
9 months ago <iframe onload=alert(document.domain)> 0
0
votes
0
replies
17
views
Spam: <iframe onload=alert(document.domain)>
ncdfFlow MethylSeekR cadd.v1.6.hg38 org.Sc.sgd.db MafDb.1Kgenomes.phase1.GRCh38
9 months ago <iframe onload=alert(document.domain)> 0
0
votes
1
reply
398
views
Problem using locateVariants() from the VariantAnnotation package
VariantAnnotation vari
9 months ago Marco • 0
0
votes
0
replies
301
views
SpliceWiz crashes when I apply filters, need splicing analysis help
alternativeSplicingEvents.hg38 AlternativeSplicing SpliceWiz
9 months ago rachel.a.shoemaker • 0
0
votes
2
replies
485
views
pairedGSEA input files
pairedGSEA
updated 9 months ago by ▴ 10 • written 9 months ago by • 0
2
votes
5
replies
1.4k
views
Group-specific condition effects with individuals nested: matrix is not full rank
DESeq2
9 months ago picasa1983 • 0
0
votes
1
reply
366
views
TheProcess got Killed
DSS
updated 9 months ago by 68k • written 9 months ago by • 0
3
votes
7
replies
2.4k
views
Vertical line at A=0, nothing else, on MA plot
deseq2
updated 9 months ago by ▴ 10 • written 6.8 years ago by ▴ 20
3
votes
2
replies
809
views
SingleCellExperiment convenience function for metadata+expression?
SpatialExperiment SingleCellExperiment SpatialFeatureExperiment
updated 9 months ago by ▴ 40 • written 11 months ago by • 0
1
vote
2
replies
1.9k
views
help documentation for keytypes in annotationdbi packages
annotation
updated 9 months ago by ▴ 10 • written 5.2 years ago by • 0
0
votes
1
reply
895
views
How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
SingleCellData DESeq2 pseudobulk sing
updated 9 months ago by 68k • written 9 months ago by • 0
1
vote
1
reply
682
views
Interpreting DESEQ2 interaction term and inclusion of covariate
DESeq2
updated 10 months ago by ★ 1.4k • written 10 months ago by ▴ 10
0
votes
2
replies
698
views
cameraPR() non directional test
CAMERA GeneSetEnrichment
10 months ago Hugo Varet ▴ 80
1
vote
1
reply
458
views
DEseq2 design for additive treatment
DESeq2
updated 10 months ago by ★ 5.0k • written 10 months ago by • 0
11
votes
6
replies
4.8k
views
WGCNA with paired samples
wgcna paired samples exercise
updated 10 months ago by • 0 • written 9.3 years ago by ▴ 60
2
votes
2
replies
850
views
Plot title for PCA in DESeq2
DESeq2
10 months ago AL • 0
0
votes
0
replies
259
views
Error in convertMSImagingArrays2Experiment / estimateDomain in Cardinal
Mass Cardinal
10 months ago Mark Dunning ★ 1.1k
2
votes
4
replies
1.5k
views
Use of limma R package with targeted proteomics for DE analysis
DEanalysis limma olinktargetedproteomics
10 months ago • updated 9 months ago svlachavas ▴ 840
0
votes
1
reply
601
views
Does anyone have the command to download all of the core_nt using blast_db_get()
rBLAST BiocFileCache
updated 10 months ago by 4.2k • written 10 months ago by ▴ 390
1
vote
2
replies
836
views
normalizatino of dna methylation EPIC data
DNA minfiData minfiDataEPIC DNAMethylation minfi
10 months ago user_bioinfo • 0
1
vote
2
replies
1.6k
views
Error in retrieving clinical data
TCGAbiolinks
10 months ago • updated 9 months ago silickas • 0
0
votes
0
replies
573
views
News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
10 months ago Maria Doyle ▴ 110
0
votes
1
reply
818
views
News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
10 months ago • updated 9 months ago info ▴ 10
0
votes
1
reply
432
views
Pathview visualisation not including positive log2 fold changes
pathview Proteomics
updated 10 months ago by 68k • written 10 months ago by • 0
1
vote
0
replies
1.8k
views
Suggesting changing the "reply-to" field to the mailing list address.
updated 10 months ago by 4.2k • written 16.4 years ago by ▴ 950
46,699 results • Page 8 of 934
Recent ...
Replies
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Scholar to Nikos Ignatiadis ▴ 180
Locations • All
USA, 4 minutes ago
United States, 10 minutes ago
Hong Kong, 52 minutes ago
Germany, 53 minutes ago
United States, 1 hour ago
Traffic: 1039 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6