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Suggesting changing the "reply-to" field to the mailing list address.
updated 10 months ago by
shepherl
4.2k • written 16.4 years ago by
Peng Yu
▴ 950
0
votes
3
replies
1.0k
views
Differential variance analysis - can i use deseq2
DESeq2
DifferentialExpression
RNASeq
RNASeqData
scRNAseq
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Marwan
• 0
1
vote
1
reply
675
views
UniProt.ws query for single UniRef90 ID takes several minutes
UniProt.ws
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
Nina
• 0
0
votes
3
replies
695
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
10 months ago
gaye.yilmaz
• 0
0
votes
2
replies
1.3k
views
Automatically install dependencies
Install
dependencies
biocmanager
updated 10 months ago by
shepherl
4.2k • written 10 months ago by
jessica.gillespie
• 0
0
votes
2
replies
1.1k
views
Spam:
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updated 10 months ago by
xihaxiw582
• 0 • written 18.0 years ago by
Allison Hoskins
10
2
votes
2
replies
1.1k
views
SingleR with multiple single cell references
SingleR
scran
10 months ago • updated 8 months ago
maltethodberg
▴ 180
0
votes
0
replies
420
views
Help with mouse cell type annotation
annotation
SingleR
mouse
SingleCellData
scRNAseq
10 months ago
Muhammad
• 0
0
votes
1
reply
988
views
To count or not to count multi-overlapping reads?
RNA-Seq
featureCounts
Rsubread
updated 10 months ago by
Gordon Smyth
53k • written 10 months ago by
Arindam
▴ 80
0
votes
0
replies
226
views
Unable to restore chromosome sequence lengths or other metadata in BSgenome.Mfascicularis.NCBI.6.0
BSgenome.Mfascicularis.NCBI.6.0
10 months ago
Genevieve
• 0
1
vote
2
replies
1.4k
views
Weird p-values using DESeq2?
DESeq2
RNASeq
updated 10 months ago by
ATpoint
★ 5.0k • written 10 months ago by
ingrid.h
• 0
0
votes
0
replies
622
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
10 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
204
views
Generating Biphasic Curves in Offline GR Metrics Package
GRmetrics
10 months ago
Jasmitha
• 0
3
votes
5
replies
1.6k
views
Overcoming confounding in batch effect correction
sva
BiologicalQuestion
10 months ago
bbao
▴ 10
3
votes
2
replies
1.2k
views
Store Matrix in DataFrame Cell
S4Vectors
10 months ago
Dario Strbenac
★ 1.6k
0
votes
5
replies
2.0k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 10 months ago by
shepherl
4.2k • written 10 months ago by
azm.ana2
• 0
0
votes
0
replies
6
views
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netresponse
hgu219.db
MantelCorr
IlluminaDataTestFiles
10 months ago
Abu
0
0
votes
0
replies
6
views
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PhenoGeneRanker
BSgenome.Osativa.MSU.MSU7
mouse.db0
SIM
10 months ago
Abu
0
0
votes
0
replies
8
views
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Qtlizer
ropls
TransOmicsData
MethylSeekR
10 months ago
Abu
0
0
votes
0
replies
10
views
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proDA
org.Sc.sgd.db
TVTB
10 months ago
Abu
0
0
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0
replies
10
views
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JobPosting
customCMPdb
TransOmicsData
10 months ago
Abu
0
0
votes
0
replies
12
views
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GOTHiC
BubbleTree
PANR
10 months ago
Abu
0
0
votes
1
reply
776
views
KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
clusterProfiler
KEGG
10 months ago
Jessica
• 0
0
votes
0
replies
508
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
0
votes
1
reply
425
views
Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Sahil
• 0
0
votes
1
reply
792
views
In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowick TomType
WGCNA
pickSoftThreshold
SignedNowick
updated 10 months ago by
ATpoint
★ 5.0k • written 10 months ago by
ddrummer0056
• 0
0
votes
1
reply
445
views
Error: lexical error: invalid char in json text (alevin-seurat)
tximpo
tximportData
alevinQC
updated 10 months ago by
ATpoint
★ 5.0k • written 10 months ago by
ptlsugam
• 0
0
votes
0
replies
231
views
Help with MetagenomeSeq, understanding the 75th quantile
metagenomeSeq
cumulativesumscaling
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
boone5jones
• 0
0
votes
0
replies
361
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf
minfiDataEPIC
MethylationArrayData
MethylationArray
EPICv2manifest
10 months ago
charlie.wright
• 0
0
votes
3
replies
848
views
DESeq2 adujsted p-value cutoff seemingly not working
DESeq2
updated 10 months ago by
980linnet
• 0 • written 10 months ago by
Guilherme
• 0
0
votes
4
replies
712
views
Web accessibility of Bioconductor.org
website
Website
updated 10 months ago by
Sean Davis
21k • written 10 months ago by
lizhare
• 0
1
vote
2
replies
1.3k
views
Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = IntersectionNotEmpty)
GenomicAlignments
summarizeOverlaps(
Smart-seq2
proteinvariantcounting
10 months ago
SofieK
• 0
0
votes
2
replies
547
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis
Normalization
Epigenetics
MethylationArrayData
10 months ago
a.alkema
• 0
0
votes
2
replies
932
views
accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
DESeq2
updated 10 months ago by
Blair
• 0 • written 10 months ago by
A
• 0
0
votes
3
replies
624
views
displaying the differential expression with deseq2 over 4X2 samples with the individual changes in gene expression per sample
DESeq2
updated 10 months ago by
Leonard
• 0 • written 10 months ago by
Martijn
• 0
0
votes
3
replies
907
views
How to compare expression levels of genes between scRNAseq and bulkRNAseq?
Seurat
RNASeq
DESeq2
scRNAseq
updated 10 months ago by
jodan
• 0 • written 11 months ago by
Quang NN
▴ 10
5
votes
5
replies
2.1k
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 9 months ago by
michaelarringtony
• 0 • written 10 months ago by
1sunmic2
• 0
0
votes
1
reply
1.3k
views
Using genomicRanges / plyranges to calculate score of peaks within intervals
plyranges
GenomicRanges
updated 10 months ago by
Michael Love
43k • written 4.6 years ago by
alorsonmethyle
• 0
1
vote
1
reply
2.0k
views
Reducing and aggregating GRanges with gaps using plyranges
GenomicRanges
plyranges
updated 10 months ago by
Michael Love
43k • written 5.2 years ago by
r.a.policastro
• 0
4
votes
3
replies
628
views
plyranges: find exact GRanges match keeping metadata columns
plyranges
updated 10 months ago by
Michael Love
43k • written 10 months ago by
alexis.weinreb
• 0
0
votes
0
replies
401
views
News:
Mass Spectrometry and Proteomics with R/Bioconductor course
cadd.v1.6.hg38
10 months ago
info
▴ 10
0
votes
1
reply
431
views
Restricting differential binding analysis to only TSS-proximal regions
ChIP
csaw
updated 10 months ago by
Aaron Lun
★ 29k • written 10 months ago by
Luca
• 0
0
votes
0
replies
297
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
10 months ago
User3088
• 0
0
votes
0
replies
301
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
0
votes
1
reply
468
views
building samplesheet and plot profile
DiffBind
10 months ago
yf
• 0
0
votes
0
replies
210
views
DBT JRF & PhD Scholar
BiologicalQuestion
OmicsMLRepoR
10 months ago
Manisha
• 0
0
votes
1
reply
427
views
I am having issues with bowtie2_build
genomes
bowtiew
Index
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
eduardo.pastor
• 0
0
votes
1
reply
678
views
DEG analysis across multiple timepoints, treatments and tissues
DifferentialExpression
RNASeq
DESeq2
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Sim
• 0
0
votes
0
replies
367
views
My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
DifferentialSplicing
RNASeqData
DEXSeq
10 months ago
cftattersfield
• 0
1
vote
0
replies
613
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
10 months ago
Maria Doyle
▴ 110
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